Dataset Open Access

Data publication: A deep-learning-based surrogate model for Monte-Carlo simulations of the linear energy transfer in primary brain tumor patients treated with proton-beam radiotherapy

Starke, Sebastian; Kieslich, Aaron Markus; Palkowitsch, Martina; Hennings, Fabian; Troost, Esther Gera Cornelia; Krause, Mechthild; Bensberg, Jona; Hahn, Christian; Heinzelmann, Feline; Bäumer, Christian; Lühr, Armin; Timmermann, Beate; Löck, Steffen

DCAT Export

<?xml version='1.0' encoding='utf-8'?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:adms="http://www.w3.org/ns/adms#" xmlns:cnt="http://www.w3.org/2011/content#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/" xmlns:dctype="http://purl.org/dc/dcmitype/" xmlns:dcat="http://www.w3.org/ns/dcat#" xmlns:duv="http://www.w3.org/ns/duv#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:frapo="http://purl.org/cerif/frapo/" xmlns:geo="http://www.w3.org/2003/01/geo/wgs84_pos#" xmlns:gsp="http://www.opengis.net/ont/geosparql#" xmlns:locn="http://www.w3.org/ns/locn#" xmlns:org="http://www.w3.org/ns/org#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:schema="http://schema.org/" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:vcard="http://www.w3.org/2006/vcard/ns#" xmlns:wdrs="http://www.w3.org/2007/05/powder-s#">
  <rdf:Description rdf:about="https://doi.org/10.14278/rodare.3025">
    <rdf:type rdf:resource="http://www.w3.org/ns/dcat#Dataset"/>
    <dct:type rdf:resource="http://purl.org/dc/dcmitype/Dataset"/>
    <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://doi.org/10.14278/rodare.3025</dct:identifier>
    <foaf:page rdf:resource="https://doi.org/10.14278/rodare.3025"/>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0001-5007-1868">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Starke, Sebastian</foaf:name>
        <foaf:givenName>Sebastian</foaf:givenName>
        <foaf:familyName>Starke</foaf:familyName>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Kieslich, Aaron Markus</foaf:name>
        <foaf:givenName>Aaron Markus</foaf:givenName>
        <foaf:familyName>Kieslich</foaf:familyName>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Palkowitsch, Martina</foaf:name>
        <foaf:givenName>Martina</foaf:givenName>
        <foaf:familyName>Palkowitsch</foaf:familyName>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Hennings, Fabian</foaf:name>
        <foaf:givenName>Fabian</foaf:givenName>
        <foaf:familyName>Hennings</foaf:familyName>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0001-9550-9050">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Troost, Esther Gera Cornelia</foaf:name>
        <foaf:givenName>Esther Gera Cornelia</foaf:givenName>
        <foaf:familyName>Troost</foaf:familyName>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0003-1776-9556">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Krause, Mechthild</foaf:name>
        <foaf:givenName>Mechthild</foaf:givenName>
        <foaf:familyName>Krause</foaf:familyName>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Bensberg, Jona</foaf:name>
        <foaf:givenName>Jona</foaf:givenName>
        <foaf:familyName>Bensberg</foaf:familyName>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Hahn, Christian</foaf:name>
        <foaf:givenName>Christian</foaf:givenName>
        <foaf:familyName>Hahn</foaf:familyName>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Heinzelmann, Feline</foaf:name>
        <foaf:givenName>Feline</foaf:givenName>
        <foaf:familyName>Heinzelmann</foaf:familyName>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Bäumer, Christian</foaf:name>
        <foaf:givenName>Christian</foaf:givenName>
        <foaf:familyName>Bäumer</foaf:familyName>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0002-9450-6859">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Lühr, Armin</foaf:name>
        <foaf:givenName>Armin</foaf:givenName>
        <foaf:familyName>Lühr</foaf:familyName>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Timmermann, Beate</foaf:name>
        <foaf:givenName>Beate</foaf:givenName>
        <foaf:familyName>Timmermann</foaf:familyName>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0002-7017-3738">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Löck, Steffen</foaf:name>
        <foaf:givenName>Steffen</foaf:givenName>
        <foaf:familyName>Löck</foaf:familyName>
      </rdf:Description>
    </dct:creator>
    <dct:title>Data publication: A deep-learning-based surrogate model for Monte-Carlo simulations of the linear energy transfer in primary brain tumor patients treated with proton-beam radiotherapy</dct:title>
    <dct:publisher>
      <foaf:Agent>
        <foaf:name>Rodare</foaf:name>
      </foaf:Agent>
    </dct:publisher>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2024</dct:issued>
    <dcat:keyword>proton-beam therapy</dcat:keyword>
    <dcat:keyword>relative biological effectiveness</dcat:keyword>
    <dcat:keyword>linear energy transfer</dcat:keyword>
    <dcat:keyword>NTCP models</dcat:keyword>
    <dcat:keyword>deep learning</dcat:keyword>
    <dcat:keyword>brain tumor</dcat:keyword>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2024-06-21</dct:issued>
    <owl:sameAs rdf:resource="https://rodare.hzdr.de/record/3025"/>
    <adms:identifier>
      <adms:Identifier>
        <skos:notation rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://rodare.hzdr.de/record/3025</skos:notation>
      </adms:Identifier>
    </adms:identifier>
    <owl:sameAs rdf:resource="https://www.hzdr.de/publications/Publ-38860"/>
    <dct:isReferencedBy rdf:resource="https://www.hzdr.de/publications/Publ-39339"/>
    <dct:isReferencedBy rdf:resource="https://www.hzdr.de/publications/Publ-38858"/>
    <dct:isVersionOf rdf:resource="https://doi.org/10.14278/rodare.2763"/>
    <dct:isPartOf rdf:resource="https://rodare.hzdr.de/communities/oncoray"/>
    <dct:isPartOf rdf:resource="https://rodare.hzdr.de/communities/rodare"/>
    <dct:description>&lt;p&gt;This repository contains the outputs and result data of our deep-learning-based experiments for the approximation of Monte-Carlo-simulated linear energy transfer distributions, which build the foundation for the corresponding article.&lt;/p&gt; &lt;p&gt;The Pytorch checkpoint of our finally chosen SegResNet architecture trained on the UPTD dose distributions is located at dd_pbs/Dose-LETd/clip_let_below_0.04/segresnet/all_trainvalid_data/training/lightning_logs/version_6358843/checkpoints/last.ckpt.&lt;/p&gt; &lt;p&gt;Moreover, we provide an exemplary data sample from a water phantom for trying our analysis pipeline.&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Update: &lt;/strong&gt;&lt;/p&gt; &lt;p&gt;In this new version we added results of the gamma analyses and the results obtained when trained on the same data as the above model with the difference that we did not clip Monte-Carlo-simulated LET maps as requested during the review process.&lt;/p&gt;</dct:description>
    <dct:accessRights rdf:resource="http://publications.europa.eu/resource/authority/access-right/PUBLIC"/>
    <dct:accessRights>
      <dct:RightsStatement rdf:about="info:eu-repo/semantics/openAccess">
        <rdfs:label>Open Access</rdfs:label>
      </dct:RightsStatement>
    </dct:accessRights>
    <dcat:distribution>
      <dcat:Distribution>
        <dct:rights>
          <dct:RightsStatement rdf:about="https://creativecommons.org/licenses/by/4.0/legalcode">
            <rdfs:label>Creative Commons Attribution 4.0 International</rdfs:label>
          </dct:RightsStatement>
        </dct:rights>
        <dcat:accessURL rdf:resource="https://doi.org/10.14278/rodare.3025"/>
      </dcat:Distribution>
    </dcat:distribution>
  </rdf:Description>
</rdf:RDF>
659
29
views
downloads
All versions This version
Views 659231
Downloads 294
Data volume 6.1 GB476.1 MB
Unique views 544186
Unique downloads 242
More info on how stats are collected.
Publication date:
June 21, 2024
DOI:
10.14278/rodare.3025

RODARE DOI Badge

DOI 

10.14278/rodare.3025

Markdown 

[![DOI](https://rodare.hzdr.de/badge/DOI/10.14278/rodare.3025.svg)](https://doi.org/10.14278/rodare.3025)

reStructedText 

.. image:: https://rodare.hzdr.de/badge/DOI/10.14278/rodare.3025.svg
   :target: https://doi.org/10.14278/rodare.3025

HTML 

<a href="https://doi.org/10.14278/rodare.3025"><img src="https://rodare.hzdr.de/badge/DOI/10.14278/rodare.3025.svg" alt="DOI"></a>

Image URL 

https://rodare.hzdr.de/badge/DOI/10.14278/rodare.3025.svg

Target URL 

https://doi.org/10.14278/rodare.3025

Keyword(s):
proton-beam therapy relative biological effectiveness linear energy transfer NTCP models deep learning brain tumor
Related identifiers:
Identical to:
https://www.hzdr.de/publications/Publ-38860
Referenced by:
https://www.hzdr.de/publications/Publ-39339, https://www.hzdr.de/publications/Publ-38858
Communities:
License (for files):
Creative Commons Attribution 4.0 International

Versions

Version 2 10.14278/rodare.3025 Jun 21, 2024
Version 1 10.14278/rodare.2764 Mar 15, 2024
Cite all versions? You can cite all versions by using the DOI 10.14278/rodare.2763. This DOI represents all versions, and will always resolve to the latest one. Read more.

Share

Cite as

Export