Dataset Open Access
Slice2Volume: Fusion of multimodal medical imaging and light microscopy data of irradiation-injured brain tissue in 3D.
Müller, Johannes;
Suckert, Theresa;
Beyreuther, Elke;
Schneider, Moritz;
Boucsein, Marc;
Bodenstein, Elisabeth;
Stolz-Kieslich, Liane;
Krause, Mechthild;
von Neubeck, Cläre;
Haase, Robert;
Lühr, Armin;
Dietrich, Antje
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"references": [
"Suckert, T. et al. (2019): High-precision image-guided proton irradiation of mouse brain sub-volumes",
"Bogovic, J. A. et al. (2016): Robust registration of calcium images by learned contrast synthesis",
"Klein, S. et al. (2010), elastix: a toolbox for intensity based medical image registration",
"Dorr, A. E. et al. (2008). High resolution three-dimensional brain atlas using an average magnetic resonance image of 40 adult C57Bl/6J mice",
"Steadman, P. E. et al. (2014). Genetic effects on cerebellar structure across mouse models of autism using a magnetic resonance imaging atlas",
"Ullmann, J. F. P. et al. (2013). A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex",
"Richards, K. et al. (2011). Segmentation of the mouse hippocampal formation in magnetic resonance images",
"Qiu, L. R. et al. (2018). Mouse MRI shows brain areas relatively larger in males emerge before those larger in females"
],
"notes": "Chunked zip: The histological data are stored as chunked .zip files (*.zip.001 - *.zip.0XX). In order to unpack the data, download all chunks into the same directory, then unpack.",
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11,698
95,527
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 11,698 | 2,574 |
| Downloads | 95,527 | 24,180 |
| Data volume | 1.2 PB | 321.8 TB |
| Unique views | 6,961 | 1,947 |
| Unique downloads | 51,553 | 16,157 |
- Publication date:
- January 20, 2021
- DOI:
-
- Keyword(s):
- Preclinical Image fusion Proton radiation Medical imaging Histology
- Grants:
-
European Commission:
- INSPIRE - INfraStructure in Proton International REsearch (730983)
- Related identifiers:
- Identical to:
https://www.hzdr.de/publications/Publ-32124 - Referenced by:
https://www.hzdr.de/publications/Publ-31469 - Communities:
- License (for files):
- Creative Commons Attribution 4.0 International