Dataset Open Access
Müller, Johannes; Suckert, Theresa; Beyreuther, Elke; Schneider, Moritz; Boucsein, Marc; Bodenstein, Elisabeth; Stolz-Kieslich, Liane; Krause, Mechthild; von Neubeck, Cläre; Haase, Robert; Lühr, Armin; Dietrich, Antje
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The CBCT data was used as spatial reference to allow for mask-based, slice-wise alignment of CBCT and light microscopy image data in 3D with the scriptable registration tool Elastix. </p>\n\n<p>We provide the data in raw format and as aligned data sets, as well as their spatial transformations.</p>", "related_identifiers": [ { "relation": "isIdenticalTo", "scheme": "url", "identifier": "https://www.hzdr.de/publications/Publ-32124" }, { "relation": "isVersionOf", "scheme": "doi", "identifier": "10.14278/rodare.557" } ], "references": [ "Suckert, T. et al. (2019): High-precision image-guided proton irradiation of mouse brain sub-volumes", "Bogovic, J. A. et al. (2016): Robust registration of calcium images by learned contrast synthesis", "Klein, S. et al. (2010), elastix: a toolbox for intensity based medical image registration", "Dorr, A. E. et al. (2008). High resolution three-dimensional brain atlas using an average magnetic resonance image of 40 adult C57Bl/6J mice", "Steadman, P. E. et al. (2014). Genetic effects on cerebellar structure across mouse models of autism using a magnetic resonance imaging atlas", "Ullmann, J. F. P. et al. (2013). A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex", "Richards, K. et al. (2011). Segmentation of the mouse hippocampal formation in magnetic resonance images", "Qiu, L. R. et al. (2018). Mouse MRI shows brain areas relatively larger in males emerge before those larger in females" ], "doi": "10.14278/rodare.810", "relations": { "version": [ { "count": 7, "index": 4, "parent": { "pid_type": "recid", "pid_value": "557" }, "last_child": { "pid_type": "recid", "pid_value": "1849" }, "is_last": false } ] }, "title": "Slice2Volume: Fusion of multimodal medical imaging and light microscopy data of irradiation-injured brain tissue in 3D.", "access_right_category": "success", "creators": [ { "orcid": "0000-0003-1273-2412", "affiliation": "OncoRay - National Center for Radiation Research in Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universit\u00e4t Dresden, Helmholtz-Zentrum Dresden-Rossendorf, Dresden, 01309, Germany; Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiooncology - OncoRay, Dresden, 01309, Germany;", "name": "M\u00fcller, Johannes" }, { "orcid": "0000-0003-0380-9772", "affiliation": "OncoRay - National Center for 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Germany;", "name": "Schneider, Moritz" }, { "orcid": "0000-0002-2800-7373", "affiliation": "Clinical Cooperation Unit Radiation Oncology, German Cancer Research Center (DKFZ), and Department of Radiation Oncology, Heidelberg University Hospital, Heidelberg, 69120, Germany", "name": "Boucsein, Marc" }, { "orcid": "0000-0001-8205-8422", "affiliation": "OncoRay - National Center for Radiation Research in Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universit\u00e4t Dresden, Helmholtz-Zentrum Dresden-Rossendorf, Dresden, 01309, Germany; Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiooncology - OncoRay, Dresden, 01309, Germany;", "name": "Bodenstein, Elisabeth" }, { "affiliation": "OncoRay - National Center for Radiation Research in Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universit\u00e4t Dresden, Helmholtz-Zentrum Dresden-Rossendorf, Dresden, 01309, Germany; Helmholtz-Zentrum Dresden-Rossendorf, 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