Dataset Open Access

2D and 3D convolutional neural networks for outcome modelling of locally advanced head and neck squamous cell carcinoma

Starke, Sebastian; Leger, Stefan; Zwanenburg, Alex; Leger, Karoline; Lohaus, Fabian; Linge, Annett; Schreiber, Andreas; Kalinauskaite, Goda; Tinhofer, Inge; Guberina, Nika; Guberina, Maja; Balermpas, Panagiotis; Grün, Jens von der; Ganswindt, Ute; Belka, Claus; Peeken, Jan C.; Combs, Stephanie E.; Böke, Simon; Zips, Daniel; Richter, Christian; Troost, Esther Gera Cornelia; Krause, Mechthild; Baumann, Michael; Löck, Steffen

DataCite XML Export

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  <identifier identifierType="DOI">10.14278/rodare.255</identifier>
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    <creator>
      <creatorName>Starke, Sebastian</creatorName>
      <givenName>Sebastian</givenName>
      <familyName>Starke</familyName>
      <affiliation>Helmholtz-Zentrum Dresden - Rossendorf (HZDR)</affiliation>
    </creator>
    <creator>
      <creatorName>Leger, Stefan</creatorName>
      <givenName>Stefan</givenName>
      <familyName>Leger</familyName>
      <affiliation>National Center for Tumor Diseases (NCT), Partner Site Dresden, Germany: German Cancer Research Center (DKFZ), Heidelberg, Germany; Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Dresden, Germany, and; Helmholtz Association / Helmholtz-Zentrum Dresden - Rossendorf (HZDR), Dresden, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Zwanenburg, Alex</creatorName>
      <givenName>Alex</givenName>
      <familyName>Zwanenburg</familyName>
      <affiliation>National Center for Tumor Diseases (NCT), Partner Site Dresden, Germany: German Cancer Research Center (DKFZ), Heidelberg, Germany; Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Dresden, Germany, and; Helmholtz Association / Helmholtz-Zentrum Dresden - Rossendorf (HZDR), Dresden, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Leger, Karoline</creatorName>
      <givenName>Karoline</givenName>
      <familyName>Leger</familyName>
      <affiliation>Department of Radiotherapy and Radiation Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Lohaus, Fabian</creatorName>
      <givenName>Fabian</givenName>
      <familyName>Lohaus</familyName>
      <affiliation>Department of Radiotherapy and Radiation Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Linge, Annett</creatorName>
      <givenName>Annett</givenName>
      <familyName>Linge</familyName>
      <affiliation>Department of Radiotherapy and Radiation Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Schreiber, Andreas</creatorName>
      <givenName>Andreas</givenName>
      <familyName>Schreiber</familyName>
      <affiliation>Department of Radiotherapy, Hospital Dresden-Friedrichstadt, Dresden, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Kalinauskaite, Goda</creatorName>
      <givenName>Goda</givenName>
      <familyName>Kalinauskaite</familyName>
      <affiliation>Department of Radiooncology and Radiotherapy, Charité University Hospital, Berlin, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Tinhofer, Inge</creatorName>
      <givenName>Inge</givenName>
      <familyName>Tinhofer</familyName>
      <affiliation>Department of Radiooncology and Radiotherapy, Charité University Hospital, Berlin, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Guberina, Nika</creatorName>
      <givenName>Nika</givenName>
      <familyName>Guberina</familyName>
      <affiliation>Department of Radiotherapy, Medical Faculty, University of Duisburg-Essen, Essen, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Guberina, Maja</creatorName>
      <givenName>Maja</givenName>
      <familyName>Guberina</familyName>
      <affiliation>Department of Radiotherapy, Medical Faculty, University of Duisburg-Essen, Essen, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Balermpas, Panagiotis</creatorName>
      <givenName>Panagiotis</givenName>
      <familyName>Balermpas</familyName>
      <affiliation>Department of Radiotherapy and Oncology, Goethe-University Frankfurt, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Grün, Jens von der</creatorName>
      <givenName>Jens von der</givenName>
      <familyName>Grün</familyName>
      <affiliation>Department of Radiotherapy and Oncology, Goethe-University Frankfurt, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Ganswindt, Ute</creatorName>
      <givenName>Ute</givenName>
      <familyName>Ganswindt</familyName>
      <affiliation>Department of Radiation Oncology, Ludwig-Maximilians-Universität, Munich, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Belka, Claus</creatorName>
      <givenName>Claus</givenName>
      <familyName>Belka</familyName>
      <affiliation>Department of Radiation Oncology, Ludwig-Maximilians-Universität, Munich, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Peeken, Jan C.</creatorName>
      <givenName>Jan C.</givenName>
      <familyName>Peeken</familyName>
      <affiliation>Department of Radiation Oncology, Technische Universität München, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Combs, Stephanie E.</creatorName>
      <givenName>Stephanie E.</givenName>
      <familyName>Combs</familyName>
      <affiliation>Department of Radiation Oncology, Technische Universität München, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Böke, Simon</creatorName>
      <givenName>Simon</givenName>
      <familyName>Böke</familyName>
      <affiliation>Department of Radiation Oncology, Faculty of Medicine and University Hospital Tübingen, Eberhard Karls Universität Tübingen, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Zips, Daniel</creatorName>
      <givenName>Daniel</givenName>
      <familyName>Zips</familyName>
      <affiliation>Department of Radiation Oncology, Faculty of Medicine and University Hospital Tübingen, Eberhard Karls Universität Tübingen, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Richter, Christian</creatorName>
      <givenName>Christian</givenName>
      <familyName>Richter</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-4261-4214</nameIdentifier>
      <affiliation>Department of Radiotherapy and Radiation Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Troost, Esther Gera Cornelia</creatorName>
      <givenName>Esther Gera Cornelia</givenName>
      <familyName>Troost</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-9550-9050</nameIdentifier>
      <affiliation>Department of Radiotherapy and Radiation Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Krause, Mechthild</creatorName>
      <givenName>Mechthild</givenName>
      <familyName>Krause</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-1776-9556</nameIdentifier>
      <affiliation>Department of Radiotherapy and Radiation Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Baumann, Michael</creatorName>
      <givenName>Michael</givenName>
      <familyName>Baumann</familyName>
      <affiliation>German Cancer Research Center (DKFZ), Heidelberg, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Löck, Steffen</creatorName>
      <givenName>Steffen</givenName>
      <familyName>Löck</familyName>
      <affiliation>Department of Radiotherapy and Radiation Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Germany</affiliation>
    </creator>
  </creators>
  <titles>
    <title>2D and 3D convolutional neural networks for outcome modelling of locally advanced head and neck squamous cell carcinoma</title>
  </titles>
  <publisher>Rodare</publisher>
  <publicationYear>2020</publicationYear>
  <subjects>
    <subject>convolutional neural networks</subject>
    <subject>Keras</subject>
    <subject>Deep learning</subject>
    <subject>head and neck cancer</subject>
    <subject>loco-regional-recurrence</subject>
    <subject>Cox proportional hazards</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2020-02-27</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://rodare.hzdr.de/record/255</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsIdenticalTo">https://www.hzdr.de/publications/Publ-30759</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsReferencedBy">https://www.hzdr.de/publications/Publ-30750</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.14278/rodare.254</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://rodare.hzdr.de/communities/health</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://rodare.hzdr.de/communities/rodare</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by-nc/4.0/legalcode">Creative Commons Attribution Non Commercial 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;These are the results from the analyses presented in a paper submitted to Scientific Reports.&lt;/p&gt;

&lt;p&gt;The zip file contains the trained model files and the plots that were used in the manuscript.&lt;/p&gt;

&lt;p&gt;Code for reproduction of our analyses can be obtained from https://github.com/oncoray/cnn-hnscc. There, you also find instructions on how to load our models.&lt;/p&gt;</description>
  </descriptions>
</resource>
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Publication date:
February 27, 2020
DOI:
10.14278/rodare.255

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Keyword(s):
convolutional neural networks Keras Deep learning head and neck cancer loco-regional-recurrence Cox proportional hazards
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https://www.hzdr.de/publications/Publ-30759
Referenced by:
https://www.hzdr.de/publications/Publ-30750
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Creative Commons Attribution Non Commercial 4.0 International

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