GeoPathSim.zip
The previewer is not showing all the files
GeoPathSim
1D_markov_simulation
01_run_markov_preprocessing.py
693 Bytes
02_run_markov_chain_simulation.py
1.4 kB
USER_GUIDE_markov_simulation.md
9.3 kB
config_markov_01.json
1.4 kB
config_markov_02.json
1.4 kB
data_output
.gitkeep
0 Bytes
step01_20260731_090317_lusatia_6-1a_chain1
candidate_selection.json
1.7 kB
config_used.json
1.5 kB
crack_region_1
candidate_0001.txt
1.7 kB
candidate_0001_detail.pdf
28.3 kB
candidate_0001_detail.png
137.2 kB
candidate_0002.txt
963 Bytes
candidate_0002_detail.pdf
27.3 kB
candidate_0002_detail.png
121.9 kB
candidate_0003.txt
1.0 kB
candidate_0003_detail.pdf
29.5 kB
candidate_0003_detail.png
121.7 kB
candidate_0004.txt
1.8 kB
candidate_0004_detail.pdf
30.8 kB
candidate_0004_detail.png
134.1 kB
candidate_0005.txt
4.7 kB
candidate_0005_detail.pdf
54.2 kB
candidate_0005_detail.png
152.6 kB
candidate_0006.txt
1.3 kB
candidate_0006_detail.pdf
28.0 kB
candidate_0006_detail.png
129.4 kB
candidate_0007.txt
15.7 kB
candidate_0007_detail.pdf
95.9 kB
candidate_0007_detail.png
213.6 kB
candidate_0008.txt
2.1 kB
candidate_0008_detail.pdf
26.8 kB
candidate_0008_detail.png
142.4 kB
candidate_0009.txt
1.3 kB
candidate_0009_detail.pdf
27.1 kB
candidate_0009_detail.png
132.6 kB
candidate_0010.txt
951 Bytes
candidate_0010_detail.pdf
26.5 kB
candidate_0010_detail.png
117.5 kB
candidate_0011.txt
4.3 kB
candidate_0011_detail.pdf
31.1 kB
candidate_0011_detail.png
163.3 kB
candidate_0012.txt
1.8 kB
candidate_0012_detail.pdf
27.6 kB
candidate_0012_detail.png
139.0 kB
candidate_0013.txt
651 Bytes
candidate_0013_detail.pdf
23.2 kB
candidate_0013_detail.png
106.7 kB
candidate_0014.txt
3.5 kB
candidate_0014_detail.pdf
29.2 kB
candidate_0014_detail.png
156.4 kB
candidate_0015.txt
795 Bytes
candidate_0015_detail.pdf
24.8 kB
candidate_0015_detail.png
111.6 kB
candidate_0016.txt
914 Bytes
candidate_0016_detail.pdf
28.5 kB
candidate_0016_detail.png
120.8 kB
candidate_overview.pdf
183.2 kB
candidate_overview.png
383.9 kB
final_chain
composition_lusatia_6-1a_chain1.txt
446 Bytes
join_transitions_lusatia_6-1a_chain1.txt
56 Bytes
lusatia_6-1a_chain1.txt
32.1 kB
pathway_composition.pdf
16.5 kB
pathway_composition.png
135.2 kB
pathway_overview.pdf
119.2 kB
pathway_overview.png
274.4 kB
pathway_overview_minerals.pdf
109.3 kB
pathway_overview_minerals.png
252.3 kB
pathway_sequence.pdf
13.8 kB
pathway_sequence.png
35.0 kB
manifest.json
12.4 kB
markov_preprocessing.log
584 Bytes
step02_20260731_093243_lusatia_6-1a_chain1
pred_volume_fraction
pred_volpercent.pdf
20.2 kB
pred_volpercent.png
180.0 kB
pred_volume_fraction.tsv
68.8 kB
pred_volume_fraction.xlsx
21.9 kB
pred_volume_fraction_residuals
pred_volpercent.pdf
18.4 kB
pred_volpercent.png
133.4 kB
pred_volume_fraction_residuals.tsv
44.8 kB
pred_volume_fraction_residuals.xlsx
17.5 kB
pred_weight_fraction
pred_weight_fraction.tsv
70.4 kB
pred_weight_fraction.xlsx
31.4 kB
pred_wtpercent.pdf
19.8 kB
pred_wtpercent.png
179.3 kB
pred_weight_fraction_residuals
pred_weight_fraction_residuals.tsv
45.1 kB
pred_weight_fraction_residuals.xlsx
22.6 kB
pred_wtpercent.pdf
18.0 kB
pred_wtpercent.png
132.1 kB
residual_selection.tsv
1.5 kB
run.log
729 Bytes
run_configuration.json
1.6 kB
simulated_chains.npz
4.8 MB
simulation_manifest.json
1.3 kB
simulation_results.npz
2.1 MB
training_and_simulation_examples.pdf
39.3 kB
training_and_simulation_examples.png
73.4 kB
transition_counts.tsv
451 Bytes
transition_diagnostics.json
723 Bytes
transition_matrix_heatmap.pdf
29.8 kB
transition_matrix_heatmap.png
417.2 kB
transition_probabilities.tsv
2.2 kB
rsc
markov_chain_simulation
__pycache__
cli.cpython-312.pyc
23.2 kB
config.cpython-312.pyc
14.0 kB
core.cpython-312.pyc
18.2 kB
data_io.cpython-312.pyc
16.8 kB
plotting.cpython-312.pyc
17.4 kB
cli.py
21.0 kB
config.py
11.3 kB
core.py
15.4 kB
data_io.py
13.0 kB
plotting.py
13.6 kB
markov_preprocessing
__pycache__
assembly.cpython-312.pyc
12.3 kB
cli.cpython-312.pyc
2.1 kB
config.cpython-312.pyc
22.7 kB
data_io.cpython-312.pyc
17.7 kB
extraction.cpython-312.pyc
8.6 kB
pipeline.cpython-312.pyc
17.4 kB
plotting.cpython-312.pyc
17.3 kB
utils.cpython-312.pyc
4.3 kB
assembly.py
10.1 kB
cli.py
1.5 kB
config.py
19.9 kB
data_io.py
13.8 kB
extraction.py
6.7 kB
pipeline.py
16.2 kB
plotting.py
11.5 kB
utils.py
2.8 kB
2D_multigaussian_simulation
01_run_variogram_analysis.py
1.4 kB
02_run_field_simulation.py
1.4 kB
03_run_result_plotting.py
1.4 kB
USER_GUIDE_multigaussian_simulation.md
8.8 kB
config_multigaussian_01.json
1.3 kB
config_multigaussian_02.json
703 Bytes
config_multigaussian_03.json
2.6 kB
data_output
.gitkeep
0 Bytes
step01_20260731_102801_lusatia_1b-a
metadata
minerals_color.txt
323 Bytes
minerals_joint.txt
58 Bytes
minerals_name.txt
279 Bytes
residual_mask.txt
84 Bytes
step01.log
2.1 kB
step01_config_used.json
1.5 kB
step01_manifest.json
1.8 kB
variograms
Mask_Area_0
area_summary.json
584 Bytes
counts_all.txt
161 Bytes
counts_joint.txt
140 Bytes
joint_minerals_variograms_matern_gs_i_var_lenscale_nugget_nu_r2.txt
141 Bytes
joint_variogram_01_Biotite_and_Chlorite.pdf
16.0 kB
joint_variogram_01_Biotite_and_Chlorite.png
87.9 kB
values_used_all.txt
58 Bytes
values_used_main.txt
77 Bytes
variogram_01_Albite.pdf
15.2 kB
variogram_01_Albite.png
84.6 kB
variogram_02_Quartz.pdf
15.4 kB
variogram_02_Quartz.png
83.8 kB
variogram_03_Biotite.pdf
15.0 kB
variogram_03_Biotite.png
87.4 kB
variogram_04_Orthoclase.pdf
15.2 kB
variogram_04_Orthoclase.png
88.6 kB
variograms_matern_gs_i_var_lenscale_nugget_nu_r2.txt
299 Bytes
step02_20260731_194820_lusatia_1b-a_Mask_Area_0_sim_146-150
field_simulation
simulation_0146_lusatia_1b-a_Mask_Area_0.npy
396.0 MB
simulation_0146_lusatia_1b-a_Mask_Area_0.pdf
212.7 kB
simulation_0146_lusatia_1b-a_Mask_Area_0.png
473.9 kB
simulation_0146_lusatia_1b-a_Mask_Area_0_composition.csv
372 Bytes
simulation_0146_lusatia_1b-a_Mask_Area_0_neighbour_values.txt
70 Bytes
simulation_0146_lusatia_1b-a_Mask_Area_0_neighbours.txt
261 Bytes
simulation_0147_lusatia_1b-a_Mask_Area_0.npy
396.0 MB
simulation_0147_lusatia_1b-a_Mask_Area_0.pdf
234.9 kB
simulation_0147_lusatia_1b-a_Mask_Area_0.png
542.6 kB
simulation_0147_lusatia_1b-a_Mask_Area_0_composition.csv
372 Bytes
simulation_0147_lusatia_1b-a_Mask_Area_0_neighbour_values.txt
70 Bytes
simulation_0147_lusatia_1b-a_Mask_Area_0_neighbours.txt
261 Bytes
simulation_0148_lusatia_1b-a_Mask_Area_0.npy
396.0 MB
simulation_0148_lusatia_1b-a_Mask_Area_0.pdf
208.1 kB
simulation_0148_lusatia_1b-a_Mask_Area_0.png
479.6 kB
simulation_0148_lusatia_1b-a_Mask_Area_0_composition.csv
372 Bytes
simulation_0148_lusatia_1b-a_Mask_Area_0_neighbour_values.txt
70 Bytes
simulation_0148_lusatia_1b-a_Mask_Area_0_neighbours.txt
261 Bytes
simulation_0149_lusatia_1b-a_Mask_Area_0.npy
396.0 MB
simulation_0149_lusatia_1b-a_Mask_Area_0.pdf
247.7 kB
simulation_0149_lusatia_1b-a_Mask_Area_0.png
587.6 kB
simulation_0149_lusatia_1b-a_Mask_Area_0_composition.csv
372 Bytes
simulation_0149_lusatia_1b-a_Mask_Area_0_neighbour_values.txt
70 Bytes
simulation_0149_lusatia_1b-a_Mask_Area_0_neighbours.txt
261 Bytes
simulation_0150_lusatia_1b-a_Mask_Area_0.npy
396.0 MB
simulation_0150_lusatia_1b-a_Mask_Area_0.pdf
241.4 kB
simulation_0150_lusatia_1b-a_Mask_Area_0.png
567.1 kB
simulation_0150_lusatia_1b-a_Mask_Area_0_composition.csv
372 Bytes
simulation_0150_lusatia_1b-a_Mask_Area_0_neighbour_values.txt
70 Bytes
simulation_0150_lusatia_1b-a_Mask_Area_0_neighbours.txt
261 Bytes
simulation_dummy_01_0146_lusatia_1b-a_Mask_Area_0.pdf
1.9 MB
simulation_dummy_01_0146_lusatia_1b-a_Mask_Area_0.png
2.2 MB
simulation_dummy_01_0147_lusatia_1b-a_Mask_Area_0.pdf
2.1 MB
simulation_dummy_01_0147_lusatia_1b-a_Mask_Area_0.png
2.4 MB
simulation_dummy_01_0148_lusatia_1b-a_Mask_Area_0.pdf
2.1 MB
simulation_dummy_01_0148_lusatia_1b-a_Mask_Area_0.png
2.5 MB
simulation_dummy_01_0149_lusatia_1b-a_Mask_Area_0.pdf
2.3 MB
simulation_dummy_01_0149_lusatia_1b-a_Mask_Area_0.png
2.7 MB
simulation_dummy_01_0150_lusatia_1b-a_Mask_Area_0.pdf
2.1 MB
simulation_dummy_01_0150_lusatia_1b-a_Mask_Area_0.png
2.4 MB
simulation_dummy_02_0146_lusatia_1b-a_Mask_Area_0.pdf
2.0 MB
simulation_dummy_02_0146_lusatia_1b-a_Mask_Area_0.png
2.3 MB
simulation_dummy_02_0147_lusatia_1b-a_Mask_Area_0.pdf
2.0 MB
simulation_dummy_02_0147_lusatia_1b-a_Mask_Area_0.png
2.4 MB
simulation_dummy_02_0148_lusatia_1b-a_Mask_Area_0.pdf
2.1 MB
simulation_dummy_02_0148_lusatia_1b-a_Mask_Area_0.png
2.4 MB
simulation_dummy_02_0149_lusatia_1b-a_Mask_Area_0.pdf
2.1 MB
simulation_dummy_02_0149_lusatia_1b-a_Mask_Area_0.png
2.4 MB
simulation_dummy_02_0150_lusatia_1b-a_Mask_Area_0.pdf
2.2 MB
simulation_dummy_02_0150_lusatia_1b-a_Mask_Area_0.png
2.6 MB
simulation_dummy_03_0146_lusatia_1b-a_Mask_Area_0.pdf
2.0 MB
simulation_dummy_03_0146_lusatia_1b-a_Mask_Area_0.png
2.3 MB
simulation_dummy_03_0147_lusatia_1b-a_Mask_Area_0.pdf
2.1 MB
simulation_dummy_03_0147_lusatia_1b-a_Mask_Area_0.png
2.4 MB
simulation_dummy_03_0148_lusatia_1b-a_Mask_Area_0.pdf
1.9 MB
simulation_dummy_03_0148_lusatia_1b-a_Mask_Area_0.png
2.2 MB
simulation_dummy_03_0149_lusatia_1b-a_Mask_Area_0.pdf
2.2 MB
simulation_dummy_03_0149_lusatia_1b-a_Mask_Area_0.png
2.5 MB
simulation_dummy_03_0150_lusatia_1b-a_Mask_Area_0.pdf
2.2 MB
simulation_dummy_03_0150_lusatia_1b-a_Mask_Area_0.png
2.6 MB
simulation_dummy_04_0146_lusatia_1b-a_Mask_Area_0.pdf
1.9 MB
simulation_dummy_04_0146_lusatia_1b-a_Mask_Area_0.png
2.3 MB
simulation_dummy_04_0147_lusatia_1b-a_Mask_Area_0.pdf
2.2 MB
simulation_dummy_04_0147_lusatia_1b-a_Mask_Area_0.png
2.6 MB
simulation_dummy_04_0148_lusatia_1b-a_Mask_Area_0.pdf
1.8 MB
simulation_dummy_04_0148_lusatia_1b-a_Mask_Area_0.png
2.1 MB
simulation_dummy_04_0149_lusatia_1b-a_Mask_Area_0.pdf
2.0 MB
simulation_dummy_04_0149_lusatia_1b-a_Mask_Area_0.png
2.4 MB
simulation_dummy_04_0150_lusatia_1b-a_Mask_Area_0.pdf
1.9 MB
simulation_dummy_04_0150_lusatia_1b-a_Mask_Area_0.png
2.2 MB
step02.log
3.4 kB
step02_config_used.json
797 Bytes
step02_manifest.json
4.4 kB
step02_results_GeoPathSim_beta
info.txt
482 Bytes
output20260113_115634_1b-a_Mask_Area_0_sim_1-2
field_simulation
neighbours_counts_001_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_002_1b-a_Mask_Area_0.txt
198 Bytes
simulation_result_001_1b-a_Mask_Area_0.png
276.1 kB
simulation_result_002_1b-a_Mask_Area_0.png
268.3 kB
output20260113_185327_1b-a_Mask_Area_0_sim_3-6
field_simulation
neighbours_counts_003_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_004_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_005_1b-a_Mask_Area_0.txt
197 Bytes
neighbours_counts_006_1b-a_Mask_Area_0.txt
198 Bytes
simulation_result_003_1b-a_Mask_Area_0.png
930.9 kB
simulation_result_004_1b-a_Mask_Area_0.png
927.8 kB
simulation_result_005_1b-a_Mask_Area_0.png
934.6 kB
simulation_result_006_1b-a_Mask_Area_0.png
970.4 kB
output20260115_153109_1b-a_Mask_Area_0_sim_7-12
field_simulation
neighbours_counts_007_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_008_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_009_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_010_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_011_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_012_1b-a_Mask_Area_0.txt
198 Bytes
simulation_result_007_1b-a_Mask_Area_0.png
954.5 kB
simulation_result_008_1b-a_Mask_Area_0.png
970.4 kB
simulation_result_009_1b-a_Mask_Area_0.png
945.7 kB
simulation_result_010_1b-a_Mask_Area_0.png
977.9 kB
simulation_result_011_1b-a_Mask_Area_0.png
976.3 kB
simulation_result_012_1b-a_Mask_Area_0.png
933.0 kB
output20260119_175627_1b-a_Mask_Area_0_sim_13-17
field_simulation
neighbours_counts_013_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_014_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_015_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_016_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_017_1b-a_Mask_Area_0.txt
196 Bytes
simulation_result_013_1b-a_Mask_Area_0.png
967.1 kB
simulation_result_014_1b-a_Mask_Area_0.png
967.3 kB
simulation_result_015_1b-a_Mask_Area_0.png
918.6 kB
simulation_result_016_1b-a_Mask_Area_0.png
915.3 kB
simulation_result_017_1b-a_Mask_Area_0.png
914.1 kB
output20260120_140533_1b-a_Mask_Area_0_sim_18-23
field_simulation
neighbours_counts_018_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_019_1b-a_Mask_Area_0.txt
195 Bytes
neighbours_counts_020_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_021_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_022_1b-a_Mask_Area_0.txt
196 Bytes
neighbours_counts_023_1b-a_Mask_Area_0.txt
199 Bytes
simulation_result_018_1b-a_Mask_Area_0.png
978.6 kB
simulation_result_019_1b-a_Mask_Area_0.png
915.6 kB
simulation_result_020_1b-a_Mask_Area_0.png
951.6 kB
simulation_result_021_1b-a_Mask_Area_0.png
936.7 kB
simulation_result_022_1b-a_Mask_Area_0.png
929.0 kB
simulation_result_023_1b-a_Mask_Area_0.png
950.3 kB
output20260121_165742_1b-a_Mask_Area_0_sim_24-29
field_simulation
neighbours_counts_024_1b-a_Mask_Area_0.txt
199 Bytes
neighbours_counts_025_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_026_1b-a_Mask_Area_0.txt
197 Bytes
neighbours_counts_027_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_028_1b-a_Mask_Area_0.txt
199 Bytes
neighbours_counts_029_1b-a_Mask_Area_0.txt
196 Bytes
simulation_result_024_1b-a_Mask_Area_0.png
989.3 kB
simulation_result_025_1b-a_Mask_Area_0.png
952.3 kB
simulation_result_026_1b-a_Mask_Area_0.png
879.0 kB
simulation_result_027_1b-a_Mask_Area_0.png
960.9 kB
simulation_result_028_1b-a_Mask_Area_0.png
990.1 kB
simulation_result_029_1b-a_Mask_Area_0.png
929.9 kB
output20260122_115507_1b-a_Mask_Area_0_sim_30
field_simulation
neighbours_counts_030_1b-a_Mask_Area_0.txt
195 Bytes
simulation_result_030_1b-a_Mask_Area_0.png
896.6 kB
output20260122_151054_1b-a_Mask_Area_0_sim_31-41
field_simulation
neighbours_counts_031_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_032_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_033_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_034_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_035_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_036_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_037_1b-a_Mask_Area_0.txt
199 Bytes
neighbours_counts_038_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_039_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_040_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_041_1b-a_Mask_Area_0.txt
198 Bytes
simulation_result_031_1b-a_Mask_Area_0.png
990.0 kB
simulation_result_032_1b-a_Mask_Area_0.png
957.7 kB
simulation_result_033_1b-a_Mask_Area_0.png
952.1 kB
simulation_result_034_1b-a_Mask_Area_0.png
937.2 kB
simulation_result_035_1b-a_Mask_Area_0.png
924.3 kB
simulation_result_036_1b-a_Mask_Area_0.png
940.5 kB
simulation_result_037_1b-a_Mask_Area_0.png
948.3 kB
simulation_result_038_1b-a_Mask_Area_0.png
969.1 kB
simulation_result_039_1b-a_Mask_Area_0.png
972.1 kB
simulation_result_040_1b-a_Mask_Area_0.png
929.0 kB
simulation_result_041_1b-a_Mask_Area_0.png
980.4 kB
output20260125_165830_1b-a_Mask_Area_0_sim_42-46
field_simulation
neighbours_counts_042_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_043_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_044_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_045_1b-a_Mask_Area_0.txt
196 Bytes
neighbours_counts_046_1b-a_Mask_Area_0.txt
198 Bytes
simulation_result_042_1b-a_Mask_Area_0.png
973.5 kB
simulation_result_043_1b-a_Mask_Area_0.png
902.6 kB
simulation_result_044_1b-a_Mask_Area_0.png
947.4 kB
simulation_result_045_1b-a_Mask_Area_0.png
901.2 kB
simulation_result_046_1b-a_Mask_Area_0.png
905.1 kB
output20260126_135537_1b-a_Mask_Area_0_sim_47-52
field_simulation
neighbours_counts_047_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_048_1b-a_Mask_Area_0.txt
197 Bytes
neighbours_counts_049_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_050_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_051_1b-a_Mask_Area_0.txt
200 Bytes
neighbours_counts_052_1b-a_Mask_Area_0.txt
198 Bytes
simulation_result_047_1b-a_Mask_Area_0.png
918.5 kB
simulation_result_048_1b-a_Mask_Area_0.png
891.9 kB
simulation_result_049_1b-a_Mask_Area_0.png
988.6 kB
simulation_result_050_1b-a_Mask_Area_0.png
939.5 kB
simulation_result_051_1b-a_Mask_Area_0.png
958.7 kB
simulation_result_052_1b-a_Mask_Area_0.png
954.0 kB
output20260127_135652_1b-a_Mask_Area_0_sim_53-58
field_simulation
neighbours_counts_053_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_054_1b-a_Mask_Area_0.txt
199 Bytes
neighbours_counts_055_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_056_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_057_1b-a_Mask_Area_0.txt
197 Bytes
neighbours_counts_058_1b-a_Mask_Area_0.txt
196 Bytes
simulation_result_053_1b-a_Mask_Area_0.png
934.7 kB
simulation_result_054_1b-a_Mask_Area_0.png
1.0 MB
simulation_result_055_1b-a_Mask_Area_0.png
939.2 kB
simulation_result_056_1b-a_Mask_Area_0.png
905.0 kB
simulation_result_057_1b-a_Mask_Area_0.png
960.6 kB
simulation_result_058_1b-a_Mask_Area_0.png
926.8 kB
output20260128_135514_1b-a_Mask_Area_0_sim_59-64
field_simulation
neighbours_counts_059_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_060_1b-a_Mask_Area_0.txt
199 Bytes
neighbours_counts_061_1b-a_Mask_Area_0.txt
197 Bytes
neighbours_counts_062_1b-a_Mask_Area_0.txt
199 Bytes
neighbours_counts_063_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_064_1b-a_Mask_Area_0.txt
198 Bytes
simulation_result_059_1b-a_Mask_Area_0.png
952.9 kB
simulation_result_060_1b-a_Mask_Area_0.png
950.5 kB
simulation_result_061_1b-a_Mask_Area_0.png
924.9 kB
simulation_result_062_1b-a_Mask_Area_0.png
968.8 kB
simulation_result_063_1b-a_Mask_Area_0.png
983.8 kB
simulation_result_064_1b-a_Mask_Area_0.png
933.3 kB
output20260129_132710_1b-a_Mask_Area_0_sim_65-71
field_simulation
neighbours_counts_065_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_066_1b-a_Mask_Area_0.txt
197 Bytes
neighbours_counts_067_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_068_1b-a_Mask_Area_0.txt
196 Bytes
neighbours_counts_069_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_070_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_071_1b-a_Mask_Area_0.txt
198 Bytes
simulation_result_065_1b-a_Mask_Area_0.png
970.2 kB
simulation_result_066_1b-a_Mask_Area_0.png
927.8 kB
simulation_result_067_1b-a_Mask_Area_0.png
936.5 kB
simulation_result_068_1b-a_Mask_Area_0.png
936.3 kB
simulation_result_069_1b-a_Mask_Area_0.png
905.6 kB
simulation_result_070_1b-a_Mask_Area_0.png
961.5 kB
simulation_result_071_1b-a_Mask_Area_0.png
1.0 MB
output20260130_111907_1b-a_Mask_Area_0_sim_72-79
field_simulation
neighbours_counts_072_1b-a_Mask_Area_0.txt
197 Bytes
neighbours_counts_073_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_074_1b-a_Mask_Area_0.txt
197 Bytes
neighbours_counts_075_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_076_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_077_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_078_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_079_1b-a_Mask_Area_0.txt
198 Bytes
simulation_result_072_1b-a_Mask_Area_0.png
922.1 kB
simulation_result_073_1b-a_Mask_Area_0.png
953.9 kB
simulation_result_074_1b-a_Mask_Area_0.png
949.6 kB
simulation_result_075_1b-a_Mask_Area_0.png
973.8 kB
simulation_result_076_1b-a_Mask_Area_0.png
924.5 kB
simulation_result_077_1b-a_Mask_Area_0.png
983.6 kB
simulation_result_078_1b-a_Mask_Area_0.png
943.5 kB
simulation_result_079_1b-a_Mask_Area_0.png
944.9 kB
output20260131_205712_1b-a_Mask_Area_0_sim_80-89
field_simulation
neighbours_counts_080_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_081_1b-a_Mask_Area_0.txt
196 Bytes
neighbours_counts_082_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_083_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_084_1b-a_Mask_Area_0.txt
195 Bytes
neighbours_counts_085_1b-a_Mask_Area_0.txt
199 Bytes
neighbours_counts_086_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_087_1b-a_Mask_Area_0.txt
199 Bytes
neighbours_counts_088_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_089_1b-a_Mask_Area_0.txt
198 Bytes
simulation_result_080_1b-a_Mask_Area_0.png
962.9 kB
simulation_result_081_1b-a_Mask_Area_0.png
923.0 kB
simulation_result_082_1b-a_Mask_Area_0.png
930.8 kB
simulation_result_083_1b-a_Mask_Area_0.png
940.5 kB
simulation_result_084_1b-a_Mask_Area_0.png
883.5 kB
simulation_result_085_1b-a_Mask_Area_0.png
959.9 kB
simulation_result_086_1b-a_Mask_Area_0.png
959.9 kB
simulation_result_087_1b-a_Mask_Area_0.png
942.3 kB
simulation_result_088_1b-a_Mask_Area_0.png
955.9 kB
simulation_result_089_1b-a_Mask_Area_0.png
940.4 kB
output20260202_085048_1b-a_Mask_Area_0_sim_90-100
field_simulation
neighbours_counts_090_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_091_1b-a_Mask_Area_0.txt
196 Bytes
neighbours_counts_092_1b-a_Mask_Area_0.txt
197 Bytes
neighbours_counts_093_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_094_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_095_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_096_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_097_1b-a_Mask_Area_0.txt
199 Bytes
neighbours_counts_098_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_099_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_100_1b-a_Mask_Area_0.txt
198 Bytes
simulation_result_090_1b-a_Mask_Area_0.png
974.7 kB
simulation_result_091_1b-a_Mask_Area_0.png
958.1 kB
simulation_result_092_1b-a_Mask_Area_0.png
932.8 kB
simulation_result_093_1b-a_Mask_Area_0.png
933.7 kB
simulation_result_094_1b-a_Mask_Area_0.png
917.1 kB
simulation_result_095_1b-a_Mask_Area_0.png
973.5 kB
simulation_result_096_1b-a_Mask_Area_0.png
971.8 kB
simulation_result_097_1b-a_Mask_Area_0.png
968.5 kB
simulation_result_098_1b-a_Mask_Area_0.png
949.3 kB
simulation_result_099_1b-a_Mask_Area_0.png
918.7 kB
simulation_result_100_1b-a_Mask_Area_0.png
954.6 kB
output20260204_091157_1b-a_Mask_Area_0_sim_101-110
field_simulation
neighbours_counts_101_1b-a_Mask_Area_0.txt
194 Bytes
neighbours_counts_102_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_103_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_104_1b-a_Mask_Area_0.txt
195 Bytes
neighbours_counts_105_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_106_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_107_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_108_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_109_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_110_1b-a_Mask_Area_0.txt
195 Bytes
simulation_result_101_1b-a_Mask_Area_0.png
862.2 kB
simulation_result_102_1b-a_Mask_Area_0.png
943.0 kB
simulation_result_103_1b-a_Mask_Area_0.png
976.3 kB
simulation_result_104_1b-a_Mask_Area_0.png
891.1 kB
simulation_result_105_1b-a_Mask_Area_0.png
962.3 kB
simulation_result_106_1b-a_Mask_Area_0.png
949.5 kB
simulation_result_107_1b-a_Mask_Area_0.png
873.0 kB
simulation_result_108_1b-a_Mask_Area_0.png
978.9 kB
simulation_result_109_1b-a_Mask_Area_0.png
1.0 MB
simulation_result_110_1b-a_Mask_Area_0.png
926.3 kB
output20260205_205951_1b-a_Mask_Area_0_sim_111-119
field_simulation
neighbours_counts_111_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_112_1b-a_Mask_Area_0.txt
195 Bytes
neighbours_counts_113_1b-a_Mask_Area_0.txt
201 Bytes
neighbours_counts_114_1b-a_Mask_Area_0.txt
196 Bytes
neighbours_counts_115_1b-a_Mask_Area_0.txt
195 Bytes
neighbours_counts_116_1b-a_Mask_Area_0.txt
197 Bytes
neighbours_counts_117_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_118_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_119_1b-a_Mask_Area_0.txt
198 Bytes
simulation_result_111_1b-a_Mask_Area_0.png
918.3 kB
simulation_result_112_1b-a_Mask_Area_0.png
935.8 kB
simulation_result_113_1b-a_Mask_Area_0.png
997.5 kB
simulation_result_114_1b-a_Mask_Area_0.png
926.6 kB
simulation_result_115_1b-a_Mask_Area_0.png
920.6 kB
simulation_result_116_1b-a_Mask_Area_0.png
925.0 kB
simulation_result_117_1b-a_Mask_Area_0.png
960.6 kB
simulation_result_118_1b-a_Mask_Area_0.png
994.0 kB
simulation_result_119_1b-a_Mask_Area_0.png
964.9 kB
output20260206_225720_1b-a_Mask_Area_0_sim_120-127
field_simulation
neighbours_counts_120_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_121_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_122_1b-a_Mask_Area_0.txt
195 Bytes
neighbours_counts_123_1b-a_Mask_Area_0.txt
199 Bytes
neighbours_counts_124_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_125_1b-a_Mask_Area_0.txt
195 Bytes
neighbours_counts_126_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_127_1b-a_Mask_Area_0.txt
195 Bytes
simulation_result_120_1b-a_Mask_Area_0.png
940.0 kB
simulation_result_121_1b-a_Mask_Area_0.png
920.1 kB
simulation_result_122_1b-a_Mask_Area_0.png
917.5 kB
simulation_result_123_1b-a_Mask_Area_0.png
966.3 kB
simulation_result_124_1b-a_Mask_Area_0.png
873.7 kB
simulation_result_125_1b-a_Mask_Area_0.png
881.1 kB
simulation_result_126_1b-a_Mask_Area_0.png
989.9 kB
simulation_result_127_1b-a_Mask_Area_0.png
909.7 kB
output20260207_220257_1b-a_Mask_Area_0_sim_128-131
field_simulation
neighbours_counts_128_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_129_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_130_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_131_1b-a_Mask_Area_0.txt
198 Bytes
simulation_result_128_1b-a_Mask_Area_0.png
937.4 kB
simulation_result_129_1b-a_Mask_Area_0.png
939.9 kB
simulation_result_130_1b-a_Mask_Area_0.png
931.2 kB
simulation_result_131_1b-a_Mask_Area_0.png
972.3 kB
output20260216_092403_1b-a_Mask_Area_0_sim_130-138
field_simulation
neighbours_counts_132_1b-a_Mask_Area_0.txt
196 Bytes
neighbours_counts_133_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_134_1b-a_Mask_Area_0.txt
197 Bytes
neighbours_counts_135_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_136_1b-a_Mask_Area_0.txt
198 Bytes
neighbours_counts_137_1b-a_Mask_Area_0.txt
199 Bytes
neighbours_counts_138_1b-a_Mask_Area_0.txt
198 Bytes
simulation_result_132_1b-a_Mask_Area_0.png
938.0 kB
simulation_result_133_1b-a_Mask_Area_0.png
940.8 kB
simulation_result_134_1b-a_Mask_Area_0.png
926.2 kB
simulation_result_135_1b-a_Mask_Area_0.png
921.9 kB
simulation_result_136_1b-a_Mask_Area_0.png
938.1 kB
simulation_result_137_1b-a_Mask_Area_0.png
1.0 MB
simulation_result_138_1b-a_Mask_Area_0.png
995.6 kB
step02_20260724_233958_1b-a_Mask_Area_0_sim_139-141
field_simulation
simulation_0001_1b-a_Mask_Area_0.npy
396.0 MB
simulation_0001_1b-a_Mask_Area_0.png
278.6 kB
simulation_0001_1b-a_Mask_Area_0_composition.csv
372 Bytes
simulation_0001_1b-a_Mask_Area_0_neighbour_values.txt
70 Bytes
simulation_0001_1b-a_Mask_Area_0_neighbours.txt
261 Bytes
simulation_0002_1b-a_Mask_Area_0.npy
396.0 MB
simulation_0002_1b-a_Mask_Area_0.png
263.8 kB
simulation_0002_1b-a_Mask_Area_0_composition.csv
372 Bytes
simulation_0002_1b-a_Mask_Area_0_neighbour_values.txt
70 Bytes
simulation_0002_1b-a_Mask_Area_0_neighbours.txt
261 Bytes
simulation_0003_1b-a_Mask_Area_0.npy
396.0 MB
simulation_0003_1b-a_Mask_Area_0.png
261.5 kB
simulation_0003_1b-a_Mask_Area_0_composition.csv
372 Bytes
simulation_0003_1b-a_Mask_Area_0_neighbour_values.txt
70 Bytes
simulation_0003_1b-a_Mask_Area_0_neighbours.txt
261 Bytes
simulation_dummy_01_0001_1b-a_Mask_Area_0.png
1.1 MB
simulation_dummy_01_0002_1b-a_Mask_Area_0.png
1.2 MB
simulation_dummy_01_0003_1b-a_Mask_Area_0.png
1.2 MB
simulation_dummy_02_0001_1b-a_Mask_Area_0.png
1.2 MB
simulation_dummy_02_0002_1b-a_Mask_Area_0.png
1.1 MB
simulation_dummy_02_0003_1b-a_Mask_Area_0.png
1.1 MB
simulation_dummy_03_0001_1b-a_Mask_Area_0.png
1.1 MB
simulation_dummy_03_0002_1b-a_Mask_Area_0.png
1.1 MB
simulation_dummy_03_0003_1b-a_Mask_Area_0.png
1.1 MB
simulation_dummy_04_0001_1b-a_Mask_Area_0.png
1.1 MB
simulation_dummy_04_0002_1b-a_Mask_Area_0.png
1.2 MB
simulation_dummy_04_0003_1b-a_Mask_Area_0.png
1.1 MB
step02_20260725_185813_1b-a_Mask_Area_0_sim_142-144
field_simulation
simulation_0004_1b-a_Mask_Area_0.npy
396.0 MB
simulation_0004_1b-a_Mask_Area_0.png
247.2 kB
simulation_0004_1b-a_Mask_Area_0_composition.csv
372 Bytes
simulation_0004_1b-a_Mask_Area_0_neighbour_values.txt
70 Bytes
simulation_0004_1b-a_Mask_Area_0_neighbours.txt
261 Bytes
simulation_0005_1b-a_Mask_Area_0.npy
396.0 MB
simulation_0005_1b-a_Mask_Area_0.png
255.0 kB
simulation_0005_1b-a_Mask_Area_0_composition.csv
372 Bytes
simulation_0005_1b-a_Mask_Area_0_neighbour_values.txt
70 Bytes
simulation_0005_1b-a_Mask_Area_0_neighbours.txt
261 Bytes
simulation_0006_1b-a_Mask_Area_0.npy
396.0 MB
simulation_0006_1b-a_Mask_Area_0.png
264.7 kB
simulation_0006_1b-a_Mask_Area_0_composition.csv
372 Bytes
simulation_0006_1b-a_Mask_Area_0_neighbour_values.txt
70 Bytes
simulation_0006_1b-a_Mask_Area_0_neighbours.txt
261 Bytes
step02_20260727_131738_1b-a_Mask_Area_0_sim_145
field_simulation
simulation_0007_lusatia_1b-a_Mask_Area_0.npy
396.0 MB
simulation_0007_lusatia_1b-a_Mask_Area_0.pdf
229.0 kB
simulation_0007_lusatia_1b-a_Mask_Area_0.png
521.1 kB
simulation_0007_lusatia_1b-a_Mask_Area_0_composition.csv
372 Bytes
simulation_0007_lusatia_1b-a_Mask_Area_0_neighbour_values.txt
70 Bytes
simulation_0007_lusatia_1b-a_Mask_Area_0_neighbours.txt
261 Bytes
values_used_all.txt
58 Bytes
step03_20260808_042905_lusatia_1b-a_plots
neighbours_heatmap_simulation.pdf
23.1 kB
neighbours_heatmap_simulation.png
132.9 kB
neighbours_heatmap_training.pdf
21.4 kB
neighbours_heatmap_training.png
127.8 kB
neighbours_heatmap_training_vs_simulation.pdf
37.2 kB
neighbours_heatmap_training_vs_simulation.png
171.3 kB
plot_data.npz
8.5 kB
plot_data_summary.csv
1.4 kB
pred_volume_fraction
plot_data_summary.csv
1.4 kB
pred_volpercent.pdf
18.1 kB
pred_volpercent.png
101.7 kB
pred_volume_fraction.csv
2.1 kB
pred_volume_fraction.tsv
2.0 kB
pred_volume_fraction.xlsx
6.4 kB
pred_volume_fraction_residuals
plot_data_summary.csv
1.4 kB
pred_volpercent.pdf
18.1 kB
pred_volpercent.png
101.7 kB
pred_volume_fraction_residuals.csv
2.1 kB
pred_volume_fraction_residuals.tsv
2.0 kB
pred_volume_fraction_residuals.xlsx
6.4 kB
pred_weight_fraction
plot_data_summary.csv
1.4 kB
pred_weight_fraction.csv
2.1 kB
pred_weight_fraction.tsv
2.0 kB
pred_weight_fraction.xlsx
6.4 kB
pred_wtpercent.pdf
18.3 kB
pred_wtpercent.png
101.5 kB
pred_weight_fraction_residuals
plot_data_summary.csv
1.4 kB
pred_weight_fraction_residuals.csv
2.1 kB
pred_weight_fraction_residuals.tsv
2.0 kB
pred_weight_fraction_residuals.xlsx
6.4 kB
pred_wtpercent.pdf
18.3 kB
pred_wtpercent.png
101.5 kB
residual_selection.tsv
557 Bytes
step03.log
40.8 kB
step03_config_used.json
2.5 kB
step03_manifest.json
90.4 kB
step03_20260808_043322_lusatia_1b-a_with_smoothed_plots
neighbours_heatmap_simulation.pdf
23.1 kB
neighbours_heatmap_simulation.png
132.9 kB
neighbours_heatmap_training.pdf
21.4 kB
neighbours_heatmap_training.png
127.8 kB
neighbours_heatmap_training_vs_simulation.pdf
37.2 kB
neighbours_heatmap_training_vs_simulation.png
171.3 kB
plot_data.npz
8.5 kB
plot_data_summary.csv
1.6 kB
pred_volume_fraction
plot_data_summary.csv
1.6 kB
pred_volpercent.pdf
18.7 kB
pred_volpercent.png
121.1 kB
pred_volume_fraction.csv
2.1 kB
pred_volume_fraction.tsv
2.0 kB
pred_volume_fraction.xlsx
6.4 kB
pred_volume_fraction_residuals
plot_data_summary.csv
1.6 kB
pred_volpercent.pdf
18.7 kB
pred_volpercent.png
121.1 kB
pred_volume_fraction_residuals.csv
2.1 kB
pred_volume_fraction_residuals.tsv
2.0 kB
pred_volume_fraction_residuals.xlsx
6.4 kB
pred_weight_fraction
plot_data_summary.csv
1.6 kB
pred_weight_fraction.csv
2.1 kB
pred_weight_fraction.tsv
2.0 kB
pred_weight_fraction.xlsx
6.4 kB
pred_wtpercent.pdf
18.9 kB
pred_wtpercent.png
120.9 kB
pred_weight_fraction_residuals
plot_data_summary.csv
1.6 kB
pred_weight_fraction_residuals.csv
2.1 kB
pred_weight_fraction_residuals.tsv
2.0 kB
pred_weight_fraction_residuals.xlsx
6.4 kB
pred_wtpercent.pdf
18.9 kB
pred_wtpercent.png
120.9 kB
residual_selection.tsv
557 Bytes
step03.log
40.9 kB
step03_config_used.json
3.0 kB
step03_manifest.json
90.5 kB
rsc
__pycache__
cli_step01.cpython-312.pyc
2.2 kB
cli_step02.cpython-312.pyc
2.2 kB
cli_step03.cpython-312.pyc
2.2 kB
config.cpython-312.pyc
60.4 kB
data_io.cpython-312.pyc
24.4 kB
neighbours.cpython-312.pyc
3.5 kB
preprocessing.cpython-312.pyc
9.1 kB
result_plotting.cpython-312.pyc
67.8 kB
simulation.cpython-312.pyc
26.1 kB
step01.cpython-312.pyc
10.4 kB
step02.cpython-312.pyc
9.3 kB
step03.cpython-312.pyc
6.3 kB
utils.cpython-312.pyc
8.3 kB
variograms.cpython-312.pyc
20.1 kB
cli_step01.py
1.4 kB
cli_step02.py
1.4 kB
cli_step03.py
1.5 kB
config.py
61.0 kB
data_io.py
20.1 kB
neighbours.py
2.3 kB
preprocessing.py
7.5 kB
result_plotting.py
65.5 kB
simulation.py
22.1 kB
step01.py
9.5 kB
step02.py
7.9 kB
step03.py
5.1 kB
utils.py
5.7 kB
variograms.py
16.9 kB
add_ons
01_run_highlight_minerals.py
1.3 kB
02_run_bulk_vs_pathway.py
1.3 kB
03_run_smoothing.py
1.3 kB
04_run_crop_images.py
1.3 kB
05_run_rve_size_analysis.py
1.3 kB
USER_GUIDE_add_ons.md
19.7 kB
config_bulk_vs_pathway.json
874 Bytes
config_crop_images.json
843 Bytes
config_highlight_minerals.json
653 Bytes
config_rve_size_analysis.json
937 Bytes
config_smoothing.json
577 Bytes
data_output
.gitkeep
0 Bytes
bulk_vs_pathway_20260731_141908_sample_1b-a
bulk_vs_pathway.log
454 Bytes
bulk_vs_pathway_data.csv
3.0 kB
bulk_vs_pathway_horizontal.pdf
34.6 kB
bulk_vs_pathway_horizontal.png
348.2 kB
bulk_vs_pathway_vertical.pdf
31.3 kB
bulk_vs_pathway_vertical.png
262.9 kB
config_used.json
1.0 kB
manifest.json
1.1 kB
bulk_vs_pathway_20260731_142551_sample_6-1a
bulk_vs_pathway.log
409 Bytes
bulk_vs_pathway_data.csv
2.4 kB
bulk_vs_pathway_horizontal.pdf
33.7 kB
bulk_vs_pathway_horizontal.png
336.6 kB
bulk_vs_pathway_vertical.pdf
31.1 kB
bulk_vs_pathway_vertical.png
272.4 kB
config_used.json
989 Bytes
manifest.json
1.1 kB
crop_images_20260731_145831_sample_1b-a
config_used.json
991 Bytes
crop_images.log
134 Bytes
cropped_mineral_indices_x0-7955_y0-12452.pdf
2.9 MB
manifest.json
1.2 kB
crop_images_20260731_150515_sample_6-1a
config_used.json
986 Bytes
crop_images.log
134 Bytes
cropped_mineral_indices_x200-6680_y10-770.pdf
194.2 kB
manifest.json
1.2 kB
highlight_minerals_20260731_141139_plagioclase_albite_1b-a
config_used.json
737 Bytes
highlight_minerals.log
373 Bytes
highlighted_minerals.pdf
904.6 kB
highlighted_minerals.png
1.5 MB
manifest.json
1.1 kB
rve_size_analysis_20260731_150928_sample_1b-a
config_used.json
1.1 kB
plots
Mask_Area_0
001_Albite
rve_bin_statistics.csv
4.0 kB
rve_binned_boxplot.pdf
18.3 kB
rve_binned_boxplot.png
152.1 kB
rve_window_scatter.pdf
250.3 kB
rve_window_scatter.png
369.8 kB
002_Orthoclase
rve_bin_statistics.csv
4.1 kB
rve_binned_boxplot.pdf
18.9 kB
rve_binned_boxplot.png
157.8 kB
rve_window_scatter.pdf
246.4 kB
rve_window_scatter.png
287.4 kB
004_Quartz
rve_bin_statistics.csv
4.1 kB
rve_binned_boxplot.pdf
18.0 kB
rve_binned_boxplot.png
151.7 kB
rve_window_scatter.pdf
249.4 kB
rve_window_scatter.png
318.0 kB
007_Biotite
rve_bin_statistics.csv
4.1 kB
rve_binned_boxplot.pdf
18.4 kB
rve_binned_boxplot.png
150.4 kB
rve_window_scatter.pdf
244.2 kB
rve_window_scatter.png
293.8 kB
009_Chlorite
rve_bin_statistics.csv
4.3 kB
rve_binned_boxplot.pdf
19.2 kB
rve_binned_boxplot.png
157.5 kB
rve_window_scatter.pdf
242.4 kB
rve_window_scatter.png
233.1 kB
027_Residuals
rve_bin_statistics.csv
4.2 kB
rve_binned_boxplot.pdf
18.5 kB
rve_binned_boxplot.png
148.1 kB
rve_window_scatter.pdf
238.5 kB
rve_window_scatter.png
140.6 kB
rve_size_summary.csv
810 Bytes
config_used.json
816 Bytes
rve_size_plots.log
672 Bytes
rve_size_plots_manifest.json
6.5 kB
rve_size_analysis.log
584 Bytes
rve_size_analysis_manifest.json
716 Bytes
window_analysis
Mask_Area_0
counts_reference.txt
100 Bytes
mineral_frequency_windowsize.csv
10.0 MB
mineral_frequency_windowsize.txt
3.6 MB
values_used.txt
38 Bytes
window_frequency_data.npz
650.3 kB
config_used.json
794 Bytes
rve_window_analysis.log
22.2 kB
rve_window_analysis_manifest.json
3.0 kB
smoothing_20260731_143807_1b-a_kernel_19
classification_after_smoothing.pdf
299.9 kB
classification_after_smoothing.png
510.7 kB
classification_before_smoothing.pdf
461.2 kB
classification_before_smoothing.png
803.4 kB
config_used.json
655 Bytes
counts_all_after_smoothing.txt
100 Bytes
neighbours_counts_different_minerals.txt
228 Bytes
neighbours_counts_trainingdata.txt
247 Bytes
neighbours_counts_trainingdata_smoothed.txt
247 Bytes
smoothing.log
459 Bytes
smoothing_manifest.json
3.1 kB
values_used.txt
38 Bytes
rsc
__pycache__
bulk_vs_pathway.cpython-312.pyc
30.8 kB
cli_bulk_vs_pathway.cpython-312.pyc
1.8 kB
cli_crop.cpython-312.pyc
1.7 kB
cli_highlight.cpython-312.pyc
1.7 kB
cli_rve_size_analysis.cpython-312.pyc
1.8 kB
cli_smoothing.cpython-312.pyc
1.8 kB
config.cpython-312.pyc
62.7 kB
crop_images.cpython-312.pyc
18.3 kB
highlight_minerals.cpython-312.pyc
13.2 kB
preprocessing_io.cpython-312.pyc
23.0 kB
rve_size_analysis.cpython-312.pyc
3.8 kB
rve_size_plots.cpython-312.pyc
33.6 kB
rve_window_analysis.cpython-312.pyc
23.4 kB
smoothing.cpython-312.pyc
19.9 kB
utils.cpython-312.pyc
6.0 kB
bulk_vs_pathway.py
25.8 kB
cli_bulk_vs_pathway.py
1.1 kB
cli_crop.py
997 Bytes
cli_highlight.py
1.0 kB
cli_rve_size_analysis.py
1.1 kB
cli_smoothing.py
1.0 kB
config.py
60.0 kB
crop_images.py
14.3 kB
highlight_minerals.py
10.1 kB
preprocessing_io.py
17.4 kB
rve_size_analysis.py
3.0 kB
rve_size_plots.py
27.0 kB
rve_window_analysis.py
20.2 kB
smoothing.py
16.1 kB
utils.py
4.3 kB
combined_result_plotting
01_run_combined_result_plotting.py
1.3 kB
USER_GUIDE_combined_result_plotting.md
12.3 kB
config_combined_results.json
2.7 kB
data_output
.gitkeep
0 Bytes
combined_results_20260808_135145_lusatia_combined_mineral_relative_frequencies
combined_results.log
970 Bytes
config_used.json
2.6 kB
manifest.json
8.0 kB
mineral_group_mapping.txt
1.8 kB
plot_data_summary.csv
70.9 kB
pred_volume_fraction_residuals
plot_data_summary.csv
88.4 kB
pred_volpercent.pdf
17.2 kB
pred_volpercent.png
105.7 kB
pred_volume_fraction_residuals.csv
88.7 kB
pred_volume_fraction_residuals.tsv
88.7 kB
pred_volume_fraction_residuals.xlsx
28.2 kB
pred_volume_fraction_residuals_values.txt
88.2 kB
pred_volume_fraction_residuals_grouped
plot_data_summary.csv
70.9 kB
pred_volpercent.pdf
16.9 kB
pred_volpercent.png
93.3 kB
pred_volume_fraction_residuals_grouped.csv
71.0 kB
pred_volume_fraction_residuals_grouped.tsv
71.0 kB
pred_volume_fraction_residuals_grouped.xlsx
23.9 kB
pred_volume_fraction_residuals_grouped_values.txt
70.7 kB
pred_weight_fraction_residuals
plot_data_summary.csv
88.4 kB
pred_weight_fraction_residuals.csv
88.7 kB
pred_weight_fraction_residuals.tsv
88.7 kB
pred_weight_fraction_residuals.xlsx
28.2 kB
pred_weight_fraction_residuals_values.txt
88.2 kB
pred_wtpercent.pdf
17.2 kB
pred_wtpercent.png
105.7 kB
pred_weight_fraction_residuals_grouped
plot_data_summary.csv
70.9 kB
pred_weight_fraction_residuals_grouped.csv
71.0 kB
pred_weight_fraction_residuals_grouped.tsv
71.0 kB
pred_weight_fraction_residuals_grouped.xlsx
23.9 kB
pred_weight_fraction_residuals_grouped_values.txt
70.7 kB
pred_wtpercent.pdf
16.9 kB
pred_wtpercent.png
93.3 kB
residual_selection.tsv
1.5 kB
sample_weight_contributions.txt
638 Bytes
rsc
__pycache__
analysis.cpython-312.pyc
22.2 kB
cli.cpython-312.pyc
25.8 kB
config.cpython-312.pyc
26.1 kB
data_io.cpython-312.pyc
45.1 kB
plotting.cpython-312.pyc
6.5 kB
analysis.py
18.6 kB
cli.py
22.4 kB
config.py
22.5 kB
data_io.py
34.3 kB
plotting.py
4.5 kB
data_input
.gitkeep
0 Bytes
Lusatia_Granite_Data
1b-a_GXMAP_BSE_SAMPLE.bmp
100.0 MB
1b-a_GXMAP_MINERAL_SAMPLE.bmp
99.1 MB
1b-a_GXMAP_MINERAL_SAMPLE_mask.bmp
99.1 MB
6-1a_GXMAP_BSE_SAMPLE.bmp
100.0 MB
6-1a_GXMAP_MINERAL_SAMPLE.bmp
98.9 MB
6-1a_GXMAP_MINERAL_SAMPLE_mask.bmp
98.9 MB
Granite_Legend.png
14.6 kB
minerals_color.txt
323 Bytes
minerals_joint.txt
58 Bytes
minerals_name.txt
279 Bytes
minerals_specgrav.txt
170 Bytes
residual_mask.txt
84 Bytes
data_preprocessing
01_run_data_preprocessing.py
749 Bytes
config_preprocessing.json
1.1 kB
data_output
.gitkeep
0 Bytes
data_preprocessing_20260731_083853_lusatia_granite
config_used.json
1.2 kB
data_preprocessing.log
1.8 kB
manifest.json
15.0 kB
mineral_legend.pdf
14.5 kB
mineral_legend.png
94.2 kB
sample_1b-a
1b-a_bse_grayscale.txt
304.6 MB
1b-a_bulk_composition.txt
1.0 kB
1b-a_bulk_composition_mask_area_0.txt
1.0 kB
1b-a_mask_color_map.txt
57 Bytes
1b-a_mask_indices.txt
198.1 MB
1b-a_mask_legend.pdf
7.8 kB
1b-a_mask_legend.png
18.3 kB
1b-a_mineral_indices.txt
199.7 MB
training_neighbours
Mask_Area_0
area_check.pdf
110.1 kB
area_check.png
286.0 kB
area_summary.json
660 Bytes
neighbours_counts_different_minerals.txt
247 Bytes
neighbours_counts_trainingdata.txt
250 Bytes
values_used.txt
70 Bytes
sample_6-1a
6-1a_bse_grayscale.txt
304.4 MB
6-1a_bulk_composition.txt
1.0 kB
6-1a_bulk_composition_mask_area_0.txt
972 Bytes
6-1a_bulk_composition_mask_area_1.txt
1.0 kB
6-1a_bulk_composition_mask_area_2.txt
1.0 kB
6-1a_bulk_composition_mask_area_3.txt
961 Bytes
6-1a_mask_color_map.txt
124 Bytes
6-1a_mask_indices.txt
197.7 MB