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openPMD-api-0.17.1.zip

openPMD-openPMD-api-678ceec
- .appveyor.yml 4.3 kB
- .circleci
  - config.yml 2.1 kB
- .clang-format 1.9 kB
- .clang-tidy 1.0 kB
- .dockerignore 2.0 kB
- .editorconfig 588 Bytes
- .github
  - ISSUE_TEMPLATE
    - bug_report.md 1.1 kB
    - feature_request.md 784 Bytes
    - install_problem.md 723 Bytes
    - question.md 627 Bytes
  - ci
    - sanitizer
      - clang
        
        Leak.supp 351 Bytes
    - spack-envs
      - clang11_nopy_nompi_h5_libcpp
        
        spack.yaml 810 Bytes
      - clang11_nopy_ompi_h5_ad2
        
        spack.yaml 1.3 kB
      - clang11_nopy_ompi_h5_ad2_libcpp
        
        spack.yaml 1.4 kB
      - clang15_py311_nompi_h5_ad2
        
        spack.yaml 1.3 kB
      - clangtidy_nopy_ompi_h5_ad2
        
        spack.yaml 1.8 kB
      - gcc12_py36_ompi_h5_ad2
        
        spack.yaml 1.6 kB
      - gcc13_py312_mpich_h5_ad2
        
        spack.yaml 1.4 kB
      - gcc_py_ompi_h5_ad2_arm64
        
        spack.yaml 1.7 kB
  - dependabot.yml 582 Bytes
  - workflows
    - clang-format
      - clang-format.sh 336 Bytes
    - codeql.yml 1.7 kB
    - dependencies
      - install_hdf5_plugins 434 Bytes
      - install_icc 812 Bytes
      - install_icx 832 Bytes
      - install_mpich 329 Bytes
      - install_nvcc12.sh 812 Bytes
      - install_nvhpc25-11.sh 673 Bytes
      - install_spack 734 Bytes
    - intel.yml 857 Bytes
    - linux.yml 13.6 kB
    - macos.yml 2.8 kB
    - nvidia.yml 3.0 kB
    - source
      - buildDoxygen 292 Bytes
      - hasEOLwhiteSpace 1.3 kB
      - hasNonASCII 1.1 kB
      - hasTabs 1.2 kB
    - source.yml 2.5 kB
    - tooling.yml 3.8 kB
    - windows.yml 3.4 kB
- .gitignore 1.6 kB
- .pre-commit-config.yaml 3.8 kB
- .readthedocs.yml 248 Bytes
- .rodare.json 5.4 kB
- CHANGELOG.rst 70.0 kB
- CITATION.cff 1.8 kB
- CMakeLists.txt 61.1 kB
- CODE_OF_CONDUCT.rst 3.4 kB
- CONTRIBUTING.rst 1.1 kB
- COPYING 35.1 kB
- COPYING.LESSER 7.7 kB
- Dockerfile 9.3 kB
- MANIFEST.in 290 Bytes
- NEWS.rst 15.1 kB
- README.md 24.4 kB
- Singularity 1.4 kB
- cmake
  - dependencies
    - catch.cmake 4.0 kB
    - json.cmake 3.3 kB
    - pybind11.cmake 4.1 kB
    - toml11.cmake 3.8 kB
  - openPMDFunctions.cmake 1.8 kB
- conda.yml 948 Bytes
- docs
  - Doxyfile 1.2 kB
  - Makefile 695 Bytes
  - requirements.txt 255 Bytes
  - source
    - analysis
      - contrib.rst 1.1 kB
      - dask.rst 2.0 kB
      - pandas.rst 3.1 kB
      - paraview.rst 2.2 kB
      - rapids.rst 2.6 kB
      - viewer.rst 2.1 kB
    - backends
      - adios1.rst 2.4 kB
      - adios2.rst 25.5 kB
      - hdf5.rst 13.4 kB
      - json.rst 8.9 kB
      - json_example.json 2.8 kB
      - overview.rst 2.8 kB
    - citation.rst 5.4 kB
    - coc.rst 25 Bytes
    - conf.py 6.2 kB
    - details
      - adios2.json 441 Bytes
      - adios2.toml 833 Bytes
      - backendconfig.rst 24.5 kB
      - config_layout.json 109 Bytes
      - config_layout.toml 96 Bytes
      - doxygen.rst 1.3 kB
      - hdf5.json 210 Bytes
      - json.json 116 Bytes
      - mpi.rst 4.7 kB
      - openpmd_extended_config.json 1.0 kB
      - openpmd_extended_config.toml 1.1 kB
      - python.rst 959 Bytes
    - dev
      - IOTask.hpp 38 Bytes
      - backend.rst 10.1 kB
      - buildoptions.rst 8.7 kB
      - contributing.rst 25 Bytes
      - dependencies.rst 1.8 kB
      - design.rst 9.0 kB
      - linking.rst 3.4 kB
      - repostructure.rst 1.5 kB
      - sphinx.rst 2.5 kB
    - index.rst 5.0 kB
    - install
      - brew.svg 4.9 kB
      - changelog.rst 22 Bytes
      - cmake.svg 17.8 kB
      - conda.svg 1.8 kB
      - install.rst 6.1 kB
      - pypi.svg 4.4 kB
      - spack.svg 2.5 kB
      - upgrade.rst 17 Bytes
    - maintenance
      - release_channels.rst 3.7 kB
      - release_github.rst 3.6 kB
      - requirements.txt 50 Bytes
    - openPMD.png 216.8 kB
    - usage
      - 10_streaming_read.cpp 39 Bytes
      - 10_streaming_read.py 38 Bytes
      - 10_streaming_write.cpp 40 Bytes
      - 10_streaming_write.py 39 Bytes
      - 11_particle_dataframe.py 42 Bytes
      - 12_span_write.cpp 35 Bytes
      - 12_span_write.py 34 Bytes
      - 1_structure.cpp 33 Bytes
      - 2_read_serial.cpp 35 Bytes
      - 2_read_serial.py 34 Bytes
      - 2a_read_thetaMode_serial.cpp 46 Bytes
      - 2a_read_thetaMode_serial.py 45 Bytes
      - 3_write_serial.cpp 36 Bytes
      - 3_write_serial.py 35 Bytes
      - 3a_write_thetaMode_serial.cpp 47 Bytes
      - 3a_write_thetaMode_serial.py 46 Bytes
      - 3b_write_resizable_particles.cpp 50 Bytes
      - 3b_write_resizable_particles.py 49 Bytes
      - 4_read_parallel.cpp 37 Bytes
      - 4_read_parallel.py 36 Bytes
      - 5_write_parallel.cpp 38 Bytes
      - 5_write_parallel.py 37 Bytes
      - 6_dump_filebased_series.cpp 45 Bytes
      - 7_extended_write_serial.cpp 45 Bytes
      - 7_extended_write_serial.py 44 Bytes
      - 8_benchmark_parallel.cpp 42 Bytes
      - 8a_benchmark_write_parallel.cpp 49 Bytes
      - 8b_benchmark_read_parallel.cpp 48 Bytes
      - 9_particle_write_serial.py 44 Bytes
      - benchmarks.rst 5.3 kB
      - concepts.rst 5.5 kB
      - examples.rst 3.5 kB
      - firstread.rst 7.5 kB
      - firstwrite.rst 7.9 kB
      - hierarchy.svg 42.1 kB
      - parallel.rst 789 Bytes
      - serial.rst 728 Bytes
      - streaming.rst 8.0 kB
      - workflow.rst 10.1 kB
    - utilities
      - 8_benchmark_parallel.cpp 42 Bytes
      - benchmark.rst 3.5 kB
      - cli.rst 6.6 kB
  - ubuntu-package.list 114 Bytes
- environment.yml 158 Bytes
- examples
  - 10_streaming_read.cpp 4.2 kB
  - 10_streaming_read.py 2.1 kB
  - 10_streaming_write.cpp 3.7 kB
  - 10_streaming_write.py 3.3 kB
  - 11_particle_dataframe.py 3.9 kB
  - 12_span_write.cpp 6.8 kB
  - 12_span_write.py 1.5 kB
  - 13_write_dynamic_configuration.cpp 7.4 kB
  - 13_write_dynamic_configuration.py 5.2 kB
  - 14_toml_template.cpp 4.0 kB
  - 15_compression.cpp 12.1 kB
  - 15_compression.py 13.3 kB
  - 1_structure.cpp 3.5 kB
  - 2_read_serial.cpp 4.3 kB
  - 2_read_serial.py 2.6 kB
  - 2a_read_thetaMode_serial.cpp 3.8 kB
  - 2a_read_thetaMode_serial.py 3.0 kB
  - 3_write_serial.cpp 3.5 kB
  - 3_write_serial.py 2.2 kB
  - 3a_write_thetaMode_serial.cpp 4.0 kB
  - 3a_write_thetaMode_serial.py 2.5 kB
  - 3b_write_resizable_particles.cpp 3.6 kB
  - 3b_write_resizable_particles.py 2.4 kB
  - 4_read_parallel.cpp 4.1 kB
  - 4_read_parallel.py 2.5 kB
  - 5_write_parallel.cpp 4.4 kB
  - 5_write_parallel.py 3.5 kB
  - 6_dump_filebased_series.cpp 8.6 kB
  - 7_extended_write_serial.cpp 10.3 kB
  - 7_extended_write_serial.py 8.0 kB
  - 8_benchmark_parallel.cpp 8.3 kB
  - 8a_benchmark_write_parallel.cpp 40.2 kB
  - 8b_benchmark_read_parallel.cpp 23.8 kB
  - 9_particle_write_serial.py 2.8 kB
- include
  - openPMD
    - ChunkInfo.hpp 22.0 kB
    - ChunkInfo_internal.hpp 2.0 kB
    - Dataset.hpp 3.9 kB
    - Datatype.hpp 22.2 kB
    - Datatype.tpp 10.0 kB
    - DatatypeHelpers.hpp 1.0 kB
    - DatatypeMacros.hpp 9.0 kB
    - Datatype_internal.hpp 3.7 kB
    - Error.hpp 4.0 kB
    - IO
      - ADIOS
        
        ADIOS2Auxiliary.hpp 13.6 kB
        
        ADIOS2File.hpp 15.8 kB
        
        ADIOS2FilePosition.hpp 1.6 kB
        
        ADIOS2IOHandler.hpp 30.8 kB
        
        ADIOS2PreloadAttributes.hpp 7.6 kB
        
        ADIOS2PreloadVariables.hpp 2.2 kB
        
        macros.hpp 1.9 kB
      - AbstractFilePosition.hpp 1.1 kB
      - AbstractIOHandler.hpp 10.8 kB
      - AbstractIOHandlerHelper.hpp 4.2 kB
      - AbstractIOHandlerImpl.hpp 22.3 kB
      - AbstractIOHandlerImplCommon.hpp 8.5 kB
      - Access.hpp 6.9 kB
      - DummyIOHandler.hpp 1.7 kB
      - FlushParametersInternal.hpp 1.3 kB
      - Format.hpp 1.6 kB
      - HDF5
        
        HDF5Auxiliary.hpp 2.2 kB
        
        HDF5FilePosition.hpp 1.2 kB
        
        HDF5IOHandler.hpp 1.6 kB
        
        HDF5IOHandlerImpl.hpp 5.2 kB
        
        ParallelHDF5IOHandler.hpp 1.9 kB
        
        ParallelHDF5IOHandlerImpl.hpp 1.6 kB
      - IOTask.hpp 26.5 kB
      - InvalidatableFile.hpp 2.8 kB
      - JSON
        
        JSONFilePosition.hpp 1.2 kB
        
        JSONIOHandler.hpp 2.0 kB
        
        JSONIOHandlerImpl.hpp 15.7 kB
    - Iteration.hpp 16.9 kB
    - IterationEncoding.hpp 1.3 kB
    - Mesh.hpp 13.0 kB
    - ParticlePatches.hpp 1.4 kB
    - ParticleSpecies.hpp 2.0 kB
    - ReadIterations.hpp 3.1 kB
    - Record.hpp 2.2 kB
    - RecordComponent.hpp 22.8 kB
    - RecordComponent.tpp 6.4 kB
    - Series.hpp 40.7 kB
    - Span.hpp 3.6 kB
    - Streaming.hpp 1.9 kB
    - ThrowError.hpp 1.8 kB
    - UndefDatatypeMacros.hpp 981 Bytes
    - UnitDimension.hpp 2.1 kB
    - WriteIterations.hpp 941 Bytes
    - auxiliary
      - BlockSlicer.hpp 1.7 kB
      - Date.hpp 1.3 kB
      - Defer.hpp 1.3 kB
      - DerefDynamicCast.hpp 1.8 kB
      - Environment.hpp 1.8 kB
      - Export.hpp 1.5 kB
      - Filesystem.hpp 4.3 kB
      - JSON.hpp 5.3 kB
      - JSONMatcher.hpp 4.2 kB
      - JSON_internal.hpp 10.1 kB
      - Memory.hpp 3.5 kB
      - Memory_internal.hpp 1.2 kB
      - Mpi.hpp 4.9 kB
      - OneDimensionalBlockSlicer.hpp 1.5 kB
      - OutOfRangeMsg.hpp 2.3 kB
      - ShareRaw.hpp 2.8 kB
      - ShareRawInternal.hpp 2.5 kB
      - StringManip.hpp 7.7 kB
      - TypeTraits.hpp 5.1 kB
      - UniquePtr.hpp 6.3 kB
      - Variant.hpp 3.7 kB
      - toml11_wrapper.hpp 940 Bytes
    - backend
      - Attributable.hpp 23.5 kB
      - Attribute.hpp 12.7 kB
      - BaseRecord.hpp 13.8 kB
      - BaseRecordComponent.hpp 7.3 kB
      - Container.hpp 12.0 kB
      - ContainerImpl.tpp 13.9 kB
      - MeshRecordComponent.hpp 3.2 kB
      - ParsePreference.hpp 1.1 kB
      - PatchRecord.hpp 1.6 kB
      - PatchRecordComponent.hpp 6.3 kB
      - Variant_internal.hpp 2.0 kB
      - Writable.hpp 6.6 kB
    - benchmark
      - MemoryProfiler.hpp 2.7 kB
      - Timer.hpp 2.9 kB
      - mpi
        
        BlockSlicer.hpp 1.0 kB
        
        DatasetFiller.hpp 2.9 kB
        
        MPIBenchmark.hpp 13.9 kB
        
        MPIBenchmarkReport.hpp 7.5 kB
        
        OneDimensionalBlockSlicer.hpp 1.1 kB
        
        RandomDatasetFiller.hpp 3.5 kB
    - binding
      - python
        
        Common.hpp 2.8 kB
        
        Container.H 5.2 kB
        
        Mpi.hpp 4.1 kB
        
        Numpy.hpp 7.4 kB
        
        Pickle.hpp 4.1 kB
        
        RecordComponent.hpp 3.7 kB
        
        UnitDimension.hpp 2.9 kB
        
        auxiliary.hpp 2.0 kB
    - cli
      - ls.hpp 4.4 kB
    - config.hpp.in 1.3 kB
    - helper
      - list_series.hpp 1.5 kB
    - openPMD.hpp 2.5 kB
    - snapshots
      - ContainerImpls.hpp 7.2 kB
      - ContainerTraits.hpp 5.8 kB
      - IteratorHelpers.hpp 1.5 kB
      - IteratorTraits.hpp 5.6 kB
      - RandomAccessIterator.hpp 3.1 kB
      - Snapshots.hpp 6.6 kB
      - StatefulIterator.hpp 14.4 kB
    - version.hpp 4.1 kB
- new_version.py 6.1 kB
- openPMD.pc.in 520 Bytes
- openPMDConfig.cmake.in 1.7 kB
- pyproject.toml 177 Bytes
- requirements.txt 14 Bytes
- setup.py 9.7 kB
- share
  - openPMD
    - download_samples.ps1 2.8 kB
    - download_samples.sh 2.3 kB
    - json_schema
      - Makefile 523 Bytes
      - README.md 2.9 kB
      - attribute_defs.toml 4.5 kB
      - attributes.toml 2.1 kB
      - check.py 2.6 kB
      - dataset_defs.toml 3.8 kB
      - iteration.toml 1.9 kB
      - mesh.toml 3.0 kB
      - mesh_record_component.toml 809 Bytes
      - particle_patches.toml 2.0 kB
      - particle_species.toml 1.2 kB
      - patch_record.toml 1.1 kB
      - record.toml 2.3 kB
      - record_component.toml 2.1 kB
      - series.toml 4.7 kB
    - validate_files.sh 1.2 kB
- spack.yaml 395 Bytes
- src
  - ChunkInfo.cpp 33.9 kB
  - Dataset.cpp 3.2 kB
  - Datatype.cpp 7.9 kB
  - Error.cpp 5.2 kB
  - Format.cpp 2.5 kB
  - IO
    - ADIOS
      - ADIOS2Auxiliary.cpp 8.1 kB
      - ADIOS2File.cpp 48.6 kB
      - ADIOS2IOHandler.cpp 93.0 kB
      - ADIOS2PreloadAttributes.cpp 10.7 kB
      - ADIOS2PreloadVariables.cpp 4.0 kB
    - AbstractIOHandler.cpp 5.2 kB
    - AbstractIOHandlerHelper.cpp 8.7 kB
    - AbstractIOHandlerImpl.cpp 19.1 kB
    - Access.cpp 1.7 kB
    - DummyIOHandler.cpp 1.6 kB
    - FlushParams.cpp 1.2 kB
    - HDF5
      - HDF5Auxiliary.cpp 13.4 kB
      - HDF5IOHandler.cpp 125.4 kB
      - ParallelHDF5IOHandler.cpp 17.0 kB
    - IOTask.cpp 9.6 kB
    - InvalidatableFile.cpp 2.5 kB
    - JSON
      - JSONFilePosition.cpp 1.1 kB
      - JSONIOHandler.cpp 2.0 kB
      - JSONIOHandlerImpl.cpp 79.0 kB
  - Iteration.cpp 31.5 kB
  - IterationEncoding.cpp 1.4 kB
  - Mesh.cpp 22.6 kB
  - ParticlePatches.cpp 3.9 kB
  - ParticleSpecies.cpp 7.2 kB
  - ReadIterations.cpp 2.7 kB
  - Record.cpp 6.2 kB
  - RecordComponent.cpp 34.9 kB
  - Series.cpp 133.9 kB
  - UnitDimension.cpp 2.3 kB
  - auxiliary
    - Date.cpp 1.6 kB
    - Filesystem.cpp 7.8 kB
    - JSON.cpp 25.6 kB
    - JSONMatcher.cpp 9.9 kB
    - Memory.cpp 7.4 kB
    - Mpi.cpp 3.4 kB
    - OneDimensionalBlockSlicer.cpp 2.8 kB
    - UniquePtr.cpp 3.8 kB
    - Variant.cpp 3.1 kB
  - backend
    - Attributable.cpp 19.3 kB
    - Attribute.cpp 5.6 kB
    - BaseRecord.cpp 25.9 kB
    - BaseRecordComponent.cpp 3.4 kB
    - Container.cpp 2.0 kB
    - MeshRecordComponent.cpp 3.6 kB
    - PatchRecord.cpp 4.1 kB
    - PatchRecordComponent.cpp 2.0 kB
    - Writable.cpp 4.0 kB
  - binding
    - python
      - Access.cpp 4.7 kB
      - Attributable.cpp 24.9 kB
      - BaseRecordComponent.cpp 2.0 kB
      - ChunkInfo.cpp 13.3 kB
      - Dataset.cpp 4.1 kB
      - Datatype.cpp 2.8 kB
      - Error.cpp 1.2 kB
      - Helper.cpp 1.6 kB
      - Iteration.cpp 4.7 kB
      - IterationEncoding.cpp 1.2 kB
      - Mesh.cpp 8.2 kB
      - MeshRecordComponent.cpp 4.1 kB
      - ParticlePatches.cpp 1.9 kB
      - ParticleSpecies.cpp 2.6 kB
      - PatchRecord.cpp 1.8 kB
      - PatchRecordComponent.cpp 8.5 kB
      - Record.cpp 3.6 kB
      - RecordComponent.cpp 42.8 kB
      - Series.cpp 25.6 kB
      - UnitDimension.cpp 2.0 kB
      - auxiliary.cpp 1.2 kB
      - openPMD.cpp 3.9 kB
      - openpmd_api
        
        DaskArray.py 5.1 kB
        
        DaskDataFrame.py 3.1 kB
        
        DataFrame.py 6.4 kB
        
        __init__.py 808 Bytes
        
        ls
        
        __init__.py 73 Bytes
        
        __main__.py 490 Bytes
        
        pipe
        
        __init__.py 73 Bytes
        
        __main__.py 19.4 kB
  - cli
    - convert-toml-json.cpp 3.1 kB
    - ls.cpp 1.2 kB
    - pipe.py 411 Bytes
  - config.cpp 2.3 kB
  - helper
    - list_series.cpp 4.8 kB
  - snapshots
    - ContainerImpls.cpp 17.2 kB
    - ContainerTraits.cpp 4.3 kB
    - IteratorHelpers.cpp 1.3 kB
    - IteratorTraits.cpp 5.5 kB
    - RandomAccessIterator.cpp 3.8 kB
    - Snapshots.cpp 4.0 kB
    - StatefulIterator.cpp 31.1 kB
  - version.cpp 2.1 kB
- test
  - AuxiliaryTest.cpp 16.4 kB
  - CatchRunner.cpp 1.5 kB
  - CoreTest.cpp 66.3 kB
  - Files_Core
    - CoreTests.hpp 1.1 kB
    - automatic_variable_encoding.cpp 10.6 kB
    - read_nonexistent_attribute.cpp 3.4 kB
  - Files_ParallelIO
    - ParallelIOTests.hpp 2.9 kB
    - bug_1655_bp5_writer_hangup.cpp 2.0 kB
    - iterate_nonstreaming_series.cpp 8.0 kB
    - read_variablebased_randomaccess.cpp 10.2 kB
  - Files_SerialIO
    - SerialIOTests.hpp 1.3 kB
    - close_and_reopen_test.cpp 14.6 kB
    - components_without_extent.cpp 8.1 kB
    - filebased_write_test.cpp 4.1 kB
    - issue_1744_unique_ptrs_at_close_time.cpp 2.0 kB
  - JSONTest.cpp 15.7 kB
  - ParallelIOTest.cpp 92.9 kB
  - SerialIOTest.cpp 284.5 kB
  - python
    - unittest
      - API
        
        APITest.py 93.5 kB
        
        __init__.py 0 Bytes
      - Test.py 896 Bytes
      - TestUtilities
        
        TestUtilities.py 799 Bytes
        
        __init__.py 0 Bytes
      - __init__.py 0 Bytes