Curve fitting automation for metabolic load of bacteria in solutions. The service is deployed at HZDR and available at https://calorimetric.hzdr.de.
This requires Poetry.
Install the package and its dependencies:
poetry install
To install the development dependencies as well, run:
poetry install --with dev
Enter the virtual environment by running:
poetry shell
Within Poetry shell, run this project as a Jupyter Notebook:
jupyter notebook metabolator/METABOLATOR.ipynb
Run with Voilà:
voila metabolator/METABOLATOR.ipynb
Format the code (within Poetry shell):
ruff format .
Run the linter and apply potential fixes (within Poetry shell):
ruff check --fix .
The conf directory contains an example service file for systemd
as well as an example nginx configuration.
We suggest running the application service as a dedicated user (not root).
This can be achieved by enabling lingering for the user with loginctl.
For more information see the Voilà documentation.
Example dataset files (common spreadsheet formats) can be placed inside the
metabolator/static/datasets directory.
Please make sure to place a license file next to the dataset.
This can be done with reuse annotate