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openPMD-api-0.14.5.zip

openPMD-openPMD-api-43a9d4f
- .appveyor.yml 4.0 kB
- .clang-format 1.9 kB
- .clang-tidy 920 Bytes
- .dockerignore 2.0 kB
- .editorconfig 530 Bytes
- .github
  - ISSUE_TEMPLATE
    - bug_report.md 1.2 kB
    - feature_request.md 784 Bytes
    - install_problem.md 723 Bytes
    - question.md 627 Bytes
  - ci
    - sanitizer
      - clang
        
        Leak.supp 414 Bytes
    - spack-envs
      - clang10_nopy_ompi_h5_ad1_ad2
        
        spack.yaml 1.4 kB
      - clang5_nopy_nompi_h5
        
        spack.yaml 766 Bytes
      - clang5_nopy_ompi_h5_ad1_ad2_bp3
        
        spack.yaml 1.4 kB
      - clang8_py38_mpich_h5_ad1_ad2
        
        spack.yaml 1.4 kB
      - clangtidy_nopy_ompi_h5_ad1_ad2
        
        spack.yaml 1.4 kB
      - gcc5_py36_ompi_h5_ad1_ad2
        
        spack.yaml 1.3 kB
  - dependabot.yml 684 Bytes
  - workflows
    - dependencies
      - install_icc 600 Bytes
      - install_icx 597 Bytes
      - install_nvcc11.sh 787 Bytes
      - install_nvhpc21-11.sh 673 Bytes
      - install_spack 720 Bytes
    - intel.yml 1.5 kB
    - linux.yml 10.5 kB
    - macos.yml 1.4 kB
    - nvidia.yml 2.3 kB
    - source
      - buildDoxygen 292 Bytes
      - hasEOLwhiteSpace 1.3 kB
      - hasNonASCII 1.1 kB
      - hasTabs 1.2 kB
    - source.yml 1.0 kB
    - tooling.yml 3.2 kB
    - windows.yml 1.8 kB
- .gitignore 1.7 kB
- .lgtm.yml 731 Bytes
- .pre-commit-config.yaml 2.9 kB
- .readthedocs.yml 161 Bytes
- .rodare.json 4.8 kB
- CHANGELOG.rst 40.9 kB
- CITATION.cff 1.2 kB
- CMakeLists.txt 56.8 kB
- CODE_OF_CONDUCT.rst 3.4 kB
- CONTRIBUTING.rst 1.1 kB
- COPYING 35.1 kB
- COPYING.LESSER 7.7 kB
- Dockerfile 10.0 kB
- MANIFEST.in 290 Bytes
- NEWS.rst 9.1 kB
- README.md 23.4 kB
- Singularity 1.5 kB
- cmake
  - try_variant.cpp 1.4 kB
- conda.yml 938 Bytes
- docs
  - Doxyfile 1.2 kB
  - Makefile 695 Bytes
  - requirements.txt 292 Bytes
  - source
    - backends
      - adios1.rst 6.5 kB
      - adios2.rst 12.3 kB
      - hdf5.rst 10.1 kB
      - json.rst 3.9 kB
      - json_example.json 2.8 kB
      - memory_filebased.png 13.4 kB
      - memory_groupbased_nosteps.png 28.6 kB
      - memory_variablebased.png 11.6 kB
      - memory_variablebased_initialization.png 13.7 kB
      - overview.rst 1.9 kB
    - citation.rst 4.8 kB
    - coc.rst 25 Bytes
    - conf.py 6.0 kB
    - details
      - adios2.json 367 Bytes
      - backendconfig.rst 7.3 kB
      - config_layout.json 145 Bytes
      - doxygen.rst 1.3 kB
      - hdf5.json 66 Bytes
      - mpi.rst 3.9 kB
      - python.rst 959 Bytes
    - dev
      - IOTask.hpp 38 Bytes
      - backend.rst 10.1 kB
      - buildoptions.rst 4.8 kB
      - contributing.rst 25 Bytes
      - dependencies.rst 1.8 kB
      - design.rst 10.0 kB
      - repostructure.rst 1.5 kB
      - sphinx.rst 2.5 kB
    - index.rst 3.3 kB
    - install
      - brew.svg 4.9 kB
      - changelog.rst 22 Bytes
      - cmake.svg 17.8 kB
      - conda.svg 1.8 kB
      - install.rst 6.1 kB
      - pypi.svg 4.4 kB
      - spack.svg 2.5 kB
      - upgrade.rst 17 Bytes
    - maintenance
      - release.rst 3.7 kB
      - requirements.txt 50 Bytes
    - openPMD.png 216.8 kB
    - usage
      - 10_streaming_read.cpp 39 Bytes
      - 10_streaming_read.py 38 Bytes
      - 10_streaming_write.cpp 40 Bytes
      - 10_streaming_write.py 39 Bytes
      - 2_read_serial.cpp 35 Bytes
      - 2_read_serial.py 34 Bytes
      - 2a_read_thetaMode_serial.cpp 46 Bytes
      - 2a_read_thetaMode_serial.py 45 Bytes
      - 3_write_serial.cpp 36 Bytes
      - 3_write_serial.py 35 Bytes
      - 3a_write_thetaMode_serial.cpp 47 Bytes
      - 3a_write_thetaMode_serial.py 46 Bytes
      - 3b_write_resizable_particles.cpp 50 Bytes
      - 3b_write_resizable_particles.py 49 Bytes
      - 4_read_parallel.cpp 37 Bytes
      - 4_read_parallel.py 36 Bytes
      - 5_write_parallel.cpp 38 Bytes
      - 5_write_parallel.py 37 Bytes
      - benchmarks.rst 5.1 kB
      - concepts.rst 4.8 kB
      - examples.rst 4.9 kB
      - firstread.rst 7.2 kB
      - firstwrite.rst 8.0 kB
      - hierarchy.svg 42.1 kB
      - parallel.rst 789 Bytes
      - serial.rst 728 Bytes
      - streaming.rst 5.4 kB
      - workflow.rst 1.8 kB
    - utilities
      - 8_benchmark_parallel.cpp 42 Bytes
      - benchmark.rst 3.5 kB
      - cli.rst 1.3 kB
  - ubuntu-package.list 114 Bytes
- environment.yml 158 Bytes
- examples
  - 10_streaming_read.cpp 1.9 kB
  - 10_streaming_read.py 1.1 kB
  - 10_streaming_write.cpp 1.6 kB
  - 10_streaming_write.py 983 Bytes
  - 11_particle_dataframe.py 3.1 kB
  - 12_span_write.cpp 3.5 kB
  - 12_span_write.py 1.1 kB
  - 1_structure.cpp 3.0 kB
  - 2_read_serial.cpp 3.7 kB
  - 2_read_serial.py 2.3 kB
  - 2a_read_thetaMode_serial.cpp 3.2 kB
  - 2a_read_thetaMode_serial.py 2.3 kB
  - 3_write_serial.cpp 2.9 kB
  - 3_write_serial.py 1.6 kB
  - 3a_write_thetaMode_serial.cpp 3.5 kB
  - 3a_write_thetaMode_serial.py 2.1 kB
  - 3b_write_resizable_particles.cpp 3.1 kB
  - 3b_write_resizable_particles.py 2.1 kB
  - 4_read_parallel.cpp 3.1 kB
  - 4_read_parallel.py 2.0 kB
  - 5_write_parallel.cpp 3.5 kB
  - 5_write_parallel.py 2.4 kB
  - 6_dump_filebased_series.cpp 7.4 kB
  - 7_extended_write_serial.cpp 8.9 kB
  - 7_extended_write_serial.py 7.3 kB
  - 8_benchmark_parallel.cpp 7.3 kB
  - 8a_benchmark_write_parallel.cpp 37.8 kB
  - 8b_benchmark_read_parallel.cpp 23.1 kB
  - 9_particle_write_serial.py 2.4 kB
- include
  - openPMD
    - ChunkInfo.hpp 2.4 kB
    - Dataset.hpp 1.9 kB
    - Datatype.hpp 20.7 kB
    - DatatypeHelpers.hpp 14.6 kB
    - IO
      - ADIOS
        
        ADIOS1Auxiliary.hpp 8.3 kB
        
        ADIOS1FilePosition.hpp 1.2 kB
        
        ADIOS1IOHandler.hpp 2.2 kB
        
        ADIOS1IOHandlerImpl.hpp 4.7 kB
        
        ADIOS2Auxiliary.hpp 11.9 kB
        
        ADIOS2FilePosition.hpp 1.6 kB
        
        ADIOS2IOHandler.hpp 44.1 kB
        
        ADIOS2PreloadAttributes.hpp 6.3 kB
        
        ParallelADIOS1IOHandler.hpp 1.9 kB
        
        ParallelADIOS1IOHandlerImpl.hpp 4.9 kB
      - AbstractFilePosition.hpp 1.0 kB
      - AbstractIOHandler.hpp 4.7 kB
      - AbstractIOHandlerHelper.hpp 2.9 kB
      - AbstractIOHandlerImpl.hpp 25.0 kB
      - AbstractIOHandlerImplCommon.hpp 8.0 kB
      - Access.hpp 1.7 kB
      - DummyIOHandler.hpp 1.6 kB
      - Format.hpp 1.6 kB
      - HDF5
        
        HDF5Auxiliary.hpp 2.2 kB
        
        HDF5FilePosition.hpp 1.1 kB
        
        HDF5IOHandler.hpp 1.5 kB
        
        HDF5IOHandlerImpl.hpp 3.9 kB
        
        ParallelHDF5IOHandler.hpp 1.7 kB
        
        ParallelHDF5IOHandlerImpl.hpp 1.6 kB
      - IOTask.hpp 18.0 kB
      - InvalidatableFile.hpp 2.5 kB
      - JSON
        
        JSONFilePosition.hpp 1.2 kB
        
        JSONIOHandler.hpp 1.4 kB
        
        JSONIOHandlerImpl.hpp 12.2 kB
    - Iteration.hpp 12.1 kB
    - IterationEncoding.hpp 1.3 kB
    - Mesh.hpp 8.9 kB
    - ParticlePatches.hpp 1.4 kB
    - ParticleSpecies.hpp 2.5 kB
    - ReadIterations.hpp 3.0 kB
    - Record.hpp 2.0 kB
    - RecordComponent.hpp 9.7 kB
    - RecordComponent.tpp 11.0 kB
    - Series.hpp 22.0 kB
    - Span.hpp 3.5 kB
    - Streaming.hpp 1.1 kB
    - UnitDimension.hpp 1.3 kB
    - WriteIterations.hpp 2.6 kB
    - auxiliary
      - Date.hpp 1.3 kB
      - DerefDynamicCast.hpp 1.8 kB
      - Environment.hpp 1.8 kB
      - Export.hpp 1.5 kB
      - Filesystem.hpp 3.6 kB
      - JSON.hpp 5.7 kB
      - Memory.hpp 5.6 kB
      - Option.hpp 4.1 kB
      - OutOfRangeMsg.hpp 2.3 kB
      - ShareRaw.hpp 2.4 kB
      - StringManip.hpp 6.6 kB
      - Unused.hpp 1.2 kB
      - Variant.hpp 3.0 kB
      - VariantSrc.hpp 1.2 kB
    - backend
      - Attributable.hpp 17.3 kB
      - Attribute.hpp 13.5 kB
      - BaseRecord.hpp 10.9 kB
      - BaseRecordComponent.hpp 3.7 kB
      - Container.hpp 15.5 kB
      - MeshRecordComponent.hpp 2.5 kB
      - PatchRecord.hpp 1.5 kB
      - PatchRecordComponent.hpp 4.2 kB
      - Writable.hpp 5.0 kB
    - benchmark
      - MemoryProfiler.hpp 2.7 kB
      - Timer.hpp 2.9 kB
      - mpi
        
        BlockSlicer.hpp 1.6 kB
        
        DatasetFiller.hpp 2.9 kB
        
        MPIBenchmark.hpp 15.1 kB
        
        MPIBenchmarkReport.hpp 7.9 kB
        
        OneDimensionalBlockSlicer.hpp 1.3 kB
        
        RandomDatasetFiller.hpp 3.5 kB
    - binding
      - python
        
        Numpy.hpp 6.9 kB
        
        Pickle.hpp 3.0 kB
        
        UnitDimension.hpp 1.8 kB
        
        Variant.hpp 1.8 kB
    - cli
      - ls.hpp 4.4 kB
    - config.hpp.in 1.3 kB
    - helper
      - list_series.hpp 1.5 kB
    - openPMD.hpp 2.4 kB
    - version.hpp 3.3 kB
- openPMD.pc.in 520 Bytes
- openPMDConfig.cmake.in 1.9 kB
- pyproject.toml 162 Bytes
- requirements.txt 21 Bytes
- setup.py 9.0 kB
- share
  - openPMD
    - cmake
      - FindADIOS.cmake 12.5 kB
    - download_samples.ps1 2.4 kB
    - download_samples.sh 1.7 kB
    - thirdParty
      - catch2
        
        include
        
        catch2
        
        catch.hpp 653.3 kB
      - json
        
        CMakeLists.txt 5.2 kB
        
        LICENSE.MIT 1.1 kB
        
        cmake
        
        config.cmake.in 710 Bytes
        
        download_test_data.cmake 3.2 kB
        
        nlohmann_jsonConfigVersion.cmake.in 709 Bytes
        
        pkg-config.pc.in 145 Bytes
        
        nlohmann_json.natvis 2.0 kB
        
        single_include
        
        nlohmann
        
        json.hpp 926.2 kB
      - pybind11
        
        CMakeLists.txt 10.4 kB
        
        LICENSE 1.7 kB
        
        MANIFEST.in 256 Bytes
        
        README.rst 8.1 kB
        
        include
        
        pybind11
        
        attr.h 21.4 kB
        
        buffer_info.h 6.1 kB
        
        cast.h 95.6 kB
        
        chrono.h 8.2 kB
        
        common.h 120 Bytes
        
        complex.h 2.0 kB
        
        detail
        
        class.h 27.8 kB
        
        common.h 40.5 kB
        
        descr.h 3.6 kB
        
        init.h 16.4 kB
        
        internals.h 16.4 kB
        
        typeid.h 1.5 kB
        
        eigen.h 29.1 kB
        
        embed.h 7.8 kB
        
        eval.h 5.1 kB
        
        functional.h 3.7 kB
        
        iostream.h 6.1 kB
        
        numpy.h 69.3 kB
        
        operators.h 9.1 kB
        
        options.h 2.0 kB
        
        pybind11.h 112.1 kB
        
        pytypes.h 66.1 kB
        
        stl.h 14.1 kB
        
        stl_bind.h 23.9 kB
        
        pybind11
        
        __init__.py 217 Bytes
        
        __main__.py 1.2 kB
        
        _version.py 202 Bytes
        
        _version.pyi 137 Bytes
        
        commands.py 663 Bytes
        
        py.typed 0 Bytes
        
        setup_helpers.py 15.1 kB
        
        setup_helpers.pyi 1.9 kB
        
        tools
        
        FindCatch.cmake 2.3 kB
        
        FindEigen3.cmake 3.1 kB
        
        FindPythonLibsNew.cmake 10.0 kB
        
        check-style.sh 1.4 kB
        
        cmake_uninstall.cmake.in 952 Bytes
        
        libsize.py 1.1 kB
        
        pybind11Common.cmake 14.0 kB
        
        pybind11Config.cmake.in 7.0 kB
        
        pybind11NewTools.cmake 9.2 kB
        
        pybind11Tools.cmake 7.3 kB
        
        pyproject.toml 94 Bytes
        
        setup_global.py.in 1.8 kB
        
        setup_main.py.in 915 Bytes
      - variant
        
        include
        
        mpark
        
        variant.hpp 102.6 kB
    - validate_files.sh 1.2 kB
- spack.yaml 377 Bytes
- src
  - ChunkInfo.cpp 1.7 kB
  - Dataset.cpp 2.9 kB
  - Datatype.cpp 8.2 kB
  - Format.cpp 2.7 kB
  - IO
    - ADIOS
      - ADIOS1IOHandler.cpp 14.4 kB
      - ADIOS2Auxiliary.cpp 8.0 kB
      - ADIOS2IOHandler.cpp 97.8 kB
      - ADIOS2PreloadAttributes.cpp 9.5 kB
      - CommonADIOS1IOHandler.cpp 60.9 kB
      - ParallelADIOS1IOHandler.cpp 16.3 kB
    - AbstractIOHandlerHelper.cpp 4.8 kB
    - DummyIOHandler.cpp 1.3 kB
    - HDF5
      - HDF5Auxiliary.cpp 13.2 kB
      - HDF5IOHandler.cpp 78.1 kB
      - ParallelHDF5IOHandler.cpp 7.1 kB
    - IOTask.cpp 3.4 kB
    - InvalidatableFile.cpp 2.2 kB
    - JSON
      - JSONFilePosition.cpp 195 Bytes
      - JSONIOHandler.cpp 1.2 kB
      - JSONIOHandlerImpl.cpp 42.5 kB
  - Iteration.cpp 22.0 kB
  - IterationEncoding.cpp 1.4 kB
  - Mesh.cpp 12.9 kB
  - ParticlePatches.cpp 2.8 kB
  - ParticleSpecies.cpp 6.4 kB
  - ReadIterations.cpp 5.5 kB
  - Record.cpp 4.4 kB
  - RecordComponent.cpp 11.0 kB
  - Series.cpp 54.9 kB
  - WriteIterations.cpp 2.5 kB
  - auxiliary
    - Date.cpp 1.7 kB
    - Filesystem.cpp 7.9 kB
    - JSON.cpp 5.1 kB
  - backend
    - Attributable.cpp 17.8 kB
    - BaseRecordComponent.cpp 2.2 kB
    - Container.cpp 1.8 kB
    - MeshRecordComponent.cpp 2.4 kB
    - PatchRecord.cpp 3.3 kB
    - PatchRecordComponent.cpp 3.7 kB
    - Writable.cpp 1.4 kB
  - benchmark
    - mpi
      - OneDimensionalBlockSlicer.cpp 2.3 kB
  - binding
    - python
      - Access.cpp 1.2 kB
      - Attributable.cpp 19.3 kB
      - BaseRecord.cpp 2.6 kB
      - BaseRecordComponent.cpp 2.0 kB
      - ChunkInfo.cpp 2.9 kB
      - Container.cpp 6.3 kB
      - Dataset.cpp 2.8 kB
      - Datatype.cpp 2.8 kB
      - Helper.cpp 1.7 kB
      - Iteration.cpp 3.2 kB
      - IterationEncoding.cpp 1.3 kB
      - Mesh.cpp 4.9 kB
      - MeshRecordComponent.cpp 2.6 kB
      - ParticlePatches.cpp 1.5 kB
      - ParticleSpecies.cpp 1.8 kB
      - PatchRecord.cpp 1.6 kB
      - PatchRecordComponent.cpp 8.8 kB
      - Record.cpp 2.6 kB
      - RecordComponent.cpp 40.0 kB
      - Series.cpp 9.1 kB
      - UnitDimension.cpp 1.4 kB
      - openPMD.cpp 4.0 kB
      - openpmd_api
        
        DaskArray.py 4.7 kB
        
        DaskDataFrame.py 2.5 kB
        
        DataFrame.py 1.9 kB
        
        __init__.py 646 Bytes
        
        ls
        
        __init__.py 73 Bytes
        
        __main__.py 490 Bytes
        
        pipe
        
        __init__.py 73 Bytes
        
        __main__.py 13.2 kB
  - cli
    - ls.cpp 1.1 kB
    - pipe.py 411 Bytes
  - config.cpp 1.7 kB
  - helper
    - list_series.cpp 5.1 kB
  - version.cpp 1.9 kB
- test
  - AuxiliaryTest.cpp 15.8 kB
  - CatchMain.cpp 54 Bytes
  - CatchRunner.cpp 750 Bytes
  - CoreTest.cpp 44.5 kB
  - ParallelIOTest.cpp 43.3 kB
  - SerialIOTest.cpp 192.7 kB
  - python
    - unittest
      - API
        
        APITest.py 76.6 kB
        
        __init__.py 0 Bytes
      - Test.py 687 Bytes
      - TestUtilities
        
        TestUtilities.py 799 Bytes
        
        __init__.py 0 Bytes
      - __init__.py 0 Bytes